Package: MsBackendMsp 1.16.0

Johannes Rainer

MsBackendMsp: Mass Spectrometry Data Backend for NIST msp Files

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Authors:Neumann Steffen [aut], Johannes Rainer [aut, cre], Michael Witting [ctb]

MsBackendMsp_1.16.0.tar.gz
MsBackendMsp_1.16.0.zip(r-4.7-any)MsBackendMsp_1.16.0.zip(r-4.6-any)MsBackendMsp_1.16.0.zip(r-4.5-any)
MsBackendMsp_1.16.0.tgz(r-4.6-any)MsBackendMsp_1.16.0.tgz(r-4.5-any)
MsBackendMsp_1.16.0.tar.gz(r-4.7-any)MsBackendMsp_1.16.0.tar.gz(r-4.6-any)
MsBackendMsp_1.16.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendMsp/json (API)

# Install 'MsBackendMsp' in R:

install.packages('MsBackendMsp', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmsp/issues

On BioConductor:MsBackendMsp-1.17.0(bioc 3.24)MsBackendMsp-1.16.0(bioc 3.23)

infrastructure proteomics massspectrometry metabolomics dataimport mass-spectrometry

6.68 score 5 stars 2 packages 40 scripts 750 downloads 5 exports 23 dependencies

Last updated from:9637e55cdc (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	151
linux-devel	OK	201
source / vignettes	OK	259
linux-release	OK	244
macos-release	OK	167
macos-oldrel	OK	108
windows-devel	OK	192
windows-release	OK	118
windows-oldrel	OK	130
wasm-release	OK	112

Exports:backendInitialize export MsBackendMsp readMsp spectraVariableMapping

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 data.table formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils ProtGenerics Rcpp S4Vectors snow Spectra

MsBackendMsp

Rendered fromMsBackendMsp.Rmdusingknitr::rmarkdown

Last update: 2024-04-04
Started: 2022-02-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
MS data backend for msp files	backendInitialize,MsBackendMsp-method export,MsBackendMsp-method MsBackendMsp MsBackendMsp-class spectraVariableMapping,MsBackendMsp-method
Reading MSP files	readMsp