Package: MsCoreUtils
Title: Core Utils for Mass Spectrometry Data
Version: 1.24.0
Description: MsCoreUtils defines low-level functions for mass
        spectrometry data and is independent of any high-level data
        structures. These functions include mass spectra processing
        functions (noise estimation, smoothing, binning, baseline
        estimation), quantitative aggregation functions (median polish,
        robust summarisation, ...), missing data imputation, data
        normalisation (quantiles, vsn, ...), misc helper functions,
        that are used across high-level data structure within the R for
        Mass Spectrometry packages.
Authors@R: c(person(given = "RforMassSpectrometry Package Maintainer",
                    email = "maintainer@rformassspectrometry.org",
                    role = "cre"),
             person(given = "Laurent", family = "Gatto",
                    email = "laurent.gatto@uclouvain.be",
                    comment = c(ORCID = "0000-0002-1520-2268"),
                    role = "aut"),
             person(given = "Johannes", family = "Rainer",
                    email = "Johannes.Rainer@eurac.edu",
                    comment = c(ORCID = "0000-0002-6977-7147"),
                    role = "aut"),
             person(given = "Sebastian", family = "Gibb",
                    email = "mail@sebastiangibb.de",
                    comment = c(ORCID = "0000-0001-7406-4443"),
                    role = "aut"),
             person(given = "Philippine", family = "Louail",
                    email = "philippine.louail@eurac.edu",
                    role = c("aut"),
                    comment = c(ORCID = "0009-0007-5429-6846")),
              person(given = "Adriano", family = "Rutz",
                    email = "rutz@imsb.biol.ethz.ch",
                    role = c("aut"),
                    comment = c(ORCID = "0000-0003-0443-9902")),
             person(given = "Adriaan", family = "Sticker", role = "ctb"),
             person(given = "Sigurdur", family = "Smarason", role = "ctb"),
             person(given = "Thomas", family = "Naake", role = "ctb"),
             person(given = "Josep Maria", family = "Badia Aparicio",
                    comment = c(ORCID = "0000-0002-5704-1124"),
                    role = "ctb"),
             person(given = "Michael", family = "Witting",
                    email = "michael.witting@helmholtz-muenchen.de",
                    role = "ctb",
                    comment = c(ORCID = "0000-0002-1462-4426")),
             person(given = "Samuel", family = "Wieczorek", role = "ctb"),
             person(given = "Roger", family = "Gine Bertomeu",
                    email = "roger.gine@iispv.cat",
                    comment = c(ORCID = "0000-0003-0288-9619"),
                    role = "ctb"),
             person(given = "Mar", family = "Garcia-Aloy",
                    email = "mar.garcia@fmach.it",
                    comment = c(ORCID = "0000-0002-1330-6610"),
                    role = "ctb"),
             person(given = "Gabriele", family = "Tomè",
                    email = "gabriele.tome@eurac.edu",
                    comment = c(ORCID = "0000-0002-3976-6068"),
                    role = "ctb"))
Depends: R (>= 3.6.0)
Imports: methods, S4Vectors, MASS, stats, clue
Suggests: testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
        impute, norm, pcaMethods, vsn, Matrix, preprocessCore,
        missForest, rlang
Enhances: HDF5Array
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
LinkingTo: Rcpp
BugReports: https://github.com/RforMassSpectrometry/MsCoreUtils/issues
URL: https://github.com/RforMassSpectrometry/MsCoreUtils
biocViews: Infrastructure, Proteomics, MassSpectrometry, Metabolomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:52:25 UTC
RemoteUrl: https://github.com/bioc/MsCoreUtils
RemoteRef: RELEASE_3_23
RemoteSha: 5b13a9af1becdecc55a859d6d88effc6a09b6bd1
NeedsCompilation: yes
Packaged: 2026-06-23 21:49:23 UTC; root
Author: RforMassSpectrometry Package Maintainer [cre],
  Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>),
  Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>),
  Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Adriano Rutz [aut] (ORCID: <https://orcid.org/0000-0003-0443-9902>),
  Adriaan Sticker [ctb],
  Sigurdur Smarason [ctb],
  Thomas Naake [ctb],
  Josep Maria Badia Aparicio [ctb] (ORCID:
    <https://orcid.org/0000-0002-5704-1124>),
  Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>),
  Samuel Wieczorek [ctb],
  Roger Gine Bertomeu [ctb] (ORCID:
    <https://orcid.org/0000-0003-0288-9619>),
  Mar Garcia-Aloy [ctb] (ORCID: <https://orcid.org/0000-0002-1330-6610>),
  Gabriele Tomè [ctb] (ORCID: <https://orcid.org/0000-0002-3976-6068>)
Maintainer: RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>