Package: MuData 1.16.0

Ilia Kats

MuData: Serialization for MultiAssayExperiment Objects

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Authors:Danila Bredikhin [aut], Ilia Kats [aut, cre]

MuData_1.16.0.tar.gz
MuData_1.16.0.zip(r-4.7)MuData_1.16.0.zip(r-4.6)MuData_1.16.0.zip(r-4.5)
MuData_1.16.0.tgz(r-4.6-any)MuData_1.16.0.tgz(r-4.5-any)
MuData_1.16.0.tar.gz(r-4.7-any)MuData_1.16.0.tar.gz(r-4.6-any)
MuData_1.16.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MuData/json (API)
NEWS

# Install 'MuData' in R:
install.packages('MuData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ilia-kats/mudata/issues

On BioConductor:MuData-1.17.0(bioc 3.24)MuData-1.16.0(bioc 3.23)

dataimportanndatabioconductormudatamulti-omicsmultimodal-omicsscrna-seq

6.64 score 10 stars 36 scripts 376 downloads 4 exports 45 dependencies

Last updated from:60b9e65e27 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE252
linux-devel-x86_64NOTE364
source / vignettesOK406
linux-release-x86_64NOTE371
macos-release-arm64NOTE172
macos-oldrel-arm64NOTE161
windows-develNOTE460
windows-releaseNOTE607
windows-oldrelNOTE726
wasm-releaseOK194

Exports:readH5ADreadH5MUwriteH5ADwriteH5MU

Dependencies:abindBiobaseBiocBaseUtilsBiocGenericsbiocmakeclicpp11DelayedArraydir.expirydplyrfilelockgenericsGenomicRangesglueIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsMultiAssayExperimentpillarpkgconfigpurrrR6rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselectutf8vctrswithrXVector

CITE-seq data with CiteFuse and MuData

Danila Bredikhin, Ilia Kats

Rendered fromBlood-CITE-seq.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-01-10
Started: 2021-12-10

CITE-seq data with MultiAssayExperiment and MuData

Danila Bredikhin, Ilia Kats

Rendered fromCord-Blood-CITE-seq.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-01-10
Started: 2021-12-10

Getting started with MuData for MultiAssayExperiment

Danila Bredikhin, Ilia Kats

Rendered fromGetting-Started.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-12-21
Started: 2021-09-23