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# CITATION.cff file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "MutSeqRData" in publications use:'
type: software
license: MIT
title: 'MutSeqRData: Experimental Data for MutSeqR Examples'
version: 1.0.0
doi: 10.32614/CRAN.package.MutSeqRData
abstract: Experimental data for use with the MutSeqR vignette and examples. This dataset
  is taken from LeBlanc et al., 2022. 24 MutaMouse animals were exposed to one of
  three doses of benzo[a]pyrene or a vehicle control for 28 days by oral gavage. 28
  days after the end of the exposure, bone marrow of the femurs was harvested from
  euthanized animals. DNA extraction was conducted via DNeasy Blood and Tissue kit.
  DNA samples were sequenced using TwinStrand's Duplex Sequencing on the Mouse Mutagenesis
  Panel at > 10,000 depth. The Mouse Mutagenesis Panel comprises 20 2.4kb genomic
  targets with one located on each mouse autosome (two on chromosome 1). Pre-processing
  of sequence reads was redone since publication using an updated version of TwinStrand's
  Mutagenesis App (v. 3.20.1) which produced tabular mutation data files for each
  sample. Data contained herein are only those required for running MutSeqR examples
  and vignette.
authors:
- family-names: Dodge
  given-names: Annette E.
  email: annette.dodge@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0002-0446-9055
- family-names: Williams
  given-names: Andrew
  orcid: https://orcid.org/0000-0002-7637-7686
- family-names: LeBlanc
  given-names: Danielle P.M.
  orcid: https://orcid.org/0000-0002-3847-8371
- family-names: Schuster
  given-names: David M.
  orcid: https://orcid.org/0009-0001-6316-4358
- family-names: Esina
  given-names: Elena
  orcid: https://orcid.org/0009-0002-3443-378X
- family-names: Valentine
  given-names: Clint C.
- family-names: Salk
  given-names: Jesse J.
- family-names: Maslov
  given-names: Alexander Y.
- family-names: Bradley
  given-names: Christopher
- family-names: Yauk
  given-names: Carole L.
  orcid: https://orcid.org/0000-0002-6725-3454
- family-names: Marchetti
  given-names: Francesco
  orcid: https://orcid.org/0000-0002-9435-4867
- family-names: Meier
  given-names: Matthew J.
  email: matthew.meier@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0001-8199-8754
repository: https://bioconductor.org/
repository-code: https://github.com/EHSRB-BSRSE-Bioinformatics/MutSeqRData
commit: 5b776d05a660a2b71ebc208f8aa3a4dbcdc6a89a
url: https://github.com/EHSRB-BSRSE-Bioinformatics/MutSeqRData/
date-released: '2026-04-28'
contact:
- family-names: Meier
  given-names: Matthew J.
  email: matthew.meier@hc-sc.gc.ca
  orcid: https://orcid.org/0000-0001-8199-8754