MutSeqRData

This data package provides supporting data for MutSeqR.

This package contain the following objects:

• Example import_mut_data
• Example import_mut_data using Custom column names
• Example import_vcf_data
• Example mutation data
• Example mutation data filtered
• Precalculated Depth at Base 6 Resolution
• Precalculated Depth at Base 12 Resolution
• Precalculated Depth at Base 96 Resolution
• Precalculated Depth at Base 192 Resolution

Installation

Install MutSeqRData from Bioconductor:

if (!require("BiocManager", quietly=TRUE)) {
  install.packages("BiocManager")
}
BiocManager::install("MutSeqRData")

Or from Github:

if (!require("devtools", quietly = TRUE)) {
  install.packages("devtools")
}
devtools::install_github("EHSRB-BSRSE-Bioinformatics/MutSeqRData")

Load the package:

library(MutSeqRData)

Access Data from ExperimentHub

if (!require("BiocManager", quietly=TRUE)) {
  install.packages("BiocManager")
}
if (!require("ExperimentHubData", quietly = TRUE)) {
  BiocManager::install("ExperimentHubData")
}
library(ExperimentHub)
eh <- ExperimentHub()
query(eh, "MutSeqRData")
mutation_data <- eh[["access # here"]]

Session info

## R version 4.6.1 (2026-06-24)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 26.04.1 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.32.so;  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Etc/UTC
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] BiocStyle_2.40.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.39       R6_2.6.1            fastmap_1.2.0      
##  [4] xfun_0.61           maketools_1.3.2     cachem_1.1.0       
##  [7] knitr_1.52          htmltools_0.5.9     rmarkdown_2.32     
## [10] buildtools_1.0.0    lifecycle_1.0.5     cli_3.6.6          
## [13] sass_0.4.10         jquerylib_0.1.4     compiler_4.6.1     
## [16] sys_3.4.3           tools_4.6.1         evaluate_1.0.5     
## [19] bslib_0.12.0        yaml_2.3.12         BiocManager_1.30.27
## [22] jsonlite_2.0.0      rlang_1.3.0