| Title: | Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package |
|---|---|
| Description: | Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19). |
| Authors: | Xiaobei Zhao [aut, cre, cph] |
| Maintainer: | Xiaobei Zhao <[email protected]> |
| License: | GPL (>=2) |
| Version: | 1.32.0 |
| Built: | 2026-10-10 11:05:44 UTC |
| Source: | https://github.com/bioc/NGScopyData |
Subset of BAM files of human tumor and pooled normal samples by targeted panel sequencing (Zhao et al. 2014). Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
tps_90.chr6() tps_27.chr6() tps_N8.chr6()tps_90.chr6() tps_27.chr6() tps_N8.chr6()
Xiaobei Zhao
Zhao et al (2014), Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation
NGScopy
A subset of tumor sample (ID: 27) by targeted panel sequencing, a 10 percent random subsample drawn from chr6, hg19 (Zhao et al. 2014).
tps_27.chr6()tps_27.chr6()
character, the path of the (sorted) bam file and its index file
Xiaobei Zhao
NGScopyData NGScopy
require(NGScopyData) tps_27.chr6()require(NGScopyData) tps_27.chr6()
A subset of tumor sample (ID: 90) by targeted panel sequencing, a 10 percent random subsample drawn from chr6, hg19 (Zhao et al. 2014).
tps_90.chr6()tps_90.chr6()
character, the path of the (sorted) bam file and its index file
Xiaobei Zhao
NGScopyData NGScopy
require(NGScopyData) tps_90.chr6()require(NGScopyData) tps_90.chr6()
A subset of pooled normal sample (ID: N8) by targeted panel sequencing, a 10 percent random subsample, rescaled by the total number of normal samples in the "pool", drawn from chr6, hg19 (Zhao et al. 2014).
tps_N8.chr6()tps_N8.chr6()
character, the path of the (sorted) bam file and its index file
Xiaobei Zhao
NGScopyData NGScopy
require(NGScopyData) tps_N8.chr6()require(NGScopyData) tps_N8.chr6()