Package: NTW 1.62.0

Yuanhua Liu

NTW: Predict gene network using an Ordinary Differential Equation (ODE) based method

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Authors:Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

NTW_1.62.0.tar.gz
NTW_1.62.0.zip(r-4.7)NTW_1.62.0.zip(r-4.6)NTW_1.62.0.zip(r-4.5)
NTW_1.62.0.tgz(r-4.6-any)NTW_1.62.0.tgz(r-4.5-any)
NTW_1.62.0.tar.gz(r-4.7-any)NTW_1.62.0.tar.gz(r-4.6-any)
NTW_1.62.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
NTW/json (API)
NEWS

# Install 'NTW' in R:
install.packages('NTW', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • sos.data - SOS pathway perturbation data

On BioConductor:NTW-1.63.0(bioc 3.24)NTW-1.62.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

preprocessing

3.78 score 2 scripts 344 downloads 3 mentions 10 exports 1 dependencies

Last updated from:d3f698e182 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR126
linux-devel-x86_64WARNING132
source / vignettesOK223
linux-release-x86_64WARNING120
macos-release-arm64WARNING88
macos-oldrel-arm64WARNING122
windows-develWARNING74
windows-releaseWARNING69
windows-oldrelWARNING88
wasm-releaseOK89

Exports:A.estimation.SrowAP.estimation.Srowbackwardcomb.matrixforwardmethod.geomethod.mlmethod.sseNTWP.preestimation

Dependencies:mvtnorm

NTW vignette

Rendered fromNTW.Rnwusingutils::Sweaveon Jun 10 2026.

Last update: 2013-11-01
Started: 2013-11-01