Package: NestLink
Type: Package
Title: NestLink an R data package to guide through Engineered Peptide
        Barcodes for In-Depth Analyzes of Binding Protein Ensembles
Authors@R: c(person("Pascal", "Egloff",
    email = "p.egloff@imm.uzh.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0001-8948-3704")),
  person("Iwan", "Zimmermann",
    email = "izimmermann@imm.uzh.ch",
    role = c("ctb"),
    comment = c(ORCID = "0000-0003-3476-4749")),
  person("Fabian M.", "Arnold",
    role = c("ctb"),
    email = "mail@fabianarnold.com"),
  person("Cedric A.J.", "Hutter",
    email = "chutter@imm.uzh.ch",
    role = c("ctb"),
    comment = c(ORCID = "0000-0002-8920-3343")),
  person("Damien", "Morger",
    email = "damien.morger@rqmicro.com"),
  person("Lennart", "Opitz",
    email = "lopitz@fgcz.ethz.ch",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0001-7945-6737")),
  person("Lucy", "Poveda",
    email = "lucy.poveda@fgcz.uzh.ch",
    role = "ctb",
    comment = c(ORCID = "0000-0002-5291-5582")),
  person("Hans-Anton", "Keserue",
    role = c("ctb"),
    email = "ha.keserue@rqmicro.com"),
  person("Christian", "Panse",
    email = "cp@fgcz.ethz.ch",
    role = c("aut", "ctb"),
    comment = c(ORCID = "0000-0003-1975-3064")),
  person("Bernd", "Roschitzki",
    email = "bernd.roschitzki@fgcz.uzh.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0001-5756-9773")),
  person("Markus", "Seeger",
    role = c("aut"),
    email = "m.seeger@imm.uzh.ch",
    comment = c(ORCID = "0000-0003-1761-8571")))
Version: 1.28.0
Depends: R (>= 3.6), AnnotationHub (>= 2.15), ExperimentHub (>= 1.0),
        Biostrings (>= 2.51), gplots (>= 3.0), protViz (>= 0.4),
        ShortRead (>= 1.41)
Imports: grDevices, graphics, stats, utils
Description: Provides next-generation sequencing (NGS) and mass
        spectrometry (MS) sample data, code snippets and replication
        material used for developing NestLink. The NestLink approach is
        a protein binder selection and identification technology able
        to biophysically characterize thousands of library members at
        once without handling individual clones at any stage of the
        process. Data were acquired on NGS and MS platforms at the
        Functional Genomics Center Zurich.
License: GPL
VignetteBuilder: knitr
Suggests: BiocStyle (>= 2.2), DT, ggplot2, knitr, rmarkdown, testthat,
        specL, lattice, scales
NeedsCompilation: no
biocViews: ExperimentHub, ExperimentData, SequencingData,
        MassSpectrometryData, ReproducibleResearch
RoxygenNote: 6.1.1
Config/pak/sysreqs: libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:32:34 UTC
RemoteUrl: https://github.com/bioc/NestLink
RemoteRef: RELEASE_3_23
RemoteSha: 7102e675cb295467666733af6eddf4ad8eeedc5a
Packaged: 2026-10-10 11:15:20 UTC; root
Author: Pascal Egloff [aut] (ORCID: <https://orcid.org/0000-0001-8948-3704>),
  Iwan Zimmermann [ctb] (ORCID: <https://orcid.org/0000-0003-3476-4749>),
  Fabian M. Arnold [ctb],
  Cedric A.J. Hutter [ctb] (ORCID:
    <https://orcid.org/0000-0002-8920-3343>),
  Lennart Opitz [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7945-6737>),
  Lucy Poveda [ctb] (ORCID: <https://orcid.org/0000-0002-5291-5582>),
  Hans-Anton Keserue [ctb],
  Christian Panse [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-1975-3064>),
  Bernd Roschitzki [aut] (ORCID: <https://orcid.org/0000-0001-5756-9773>),
  Markus Seeger [aut] (ORCID: <https://orcid.org/0000-0003-1761-8571>)
Maintainer: Lennart Opitz <lopitz@fgcz.ethz.ch>