Introduction | CGH feature data | Gene expression data in relation to copy number
Package: Neve2006 0.50.0
VJ Carey
Neve2006: expression and CGH data on breast cancer cell lines
Experimental organization of combined expression and CGH data
Authors:
Neve2006_0.50.0.tar.gz
Neve2006_0.50.0.tar.gz(r-4.7-any)Neve2006_0.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Neve2006/json (API)
| # Install 'Neve2006' in R: |
| install.packages('Neve2006', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- neveCGHmatch - Neve Cancer Cell 2006 expression plus CGH data
- neveExCGH - Neve Cancer Cell 2006 expression plus CGH data
- neveRMAmatch - Neve Cancer Cell 2006 expression plus CGH data
On BioConductor:Neve2006-0.51.0(data/experiment 3.24)Neve2006-0.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatacancerdatabreastcancerdatadatapkg
Last updated from:654df2d7cb (on RELEASE_3_23). Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 162 | ||
| linux-devel | NOTE | 266 | ||
| source / vignettes | OK | 278 | ||
| linux-release | NOTE | 254 |
Exports:cloneMetacloneNameslogRatiosmake_cghExSet
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehgu133a.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Hs.eg.dbpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class "cghExSet" for combining CGH and expression data | cghExSet-class cloneMeta cloneMeta,cghExSet-method cloneNames cloneNames,cghExSet-method exprs,cghExSet-method initialize,cghExSet-method logRatios,cghExSet-method make_cghExSet show,cghExSet-method [,cghExSet-method |
| extractor for cghSet assay data | cghSet-class logRatios logRatios,cghSet-method |
| Neve Cancer Cell 2006 expression plus CGH data | neveCGHmatch neveExCGH neveRMAmatch |