Package: OAtools 1.0.0

Aidan Shea

OAtools: Analysis of OpenArray PCR Data

Provides a suite of R functions to analyze gene expression experiments on the OpenArray real-time PCR platform. OAtools fits logistic regressions to fluorescence curves to distinguish between real amplification and false positives. OAtools supports data import, analysis, and visualization through plots and a dynamic HTML report.

Authors:Aidan Shea [aut, cre]

OAtools_1.0.0.tar.gz
OAtools_1.0.0.zip(r-4.7)OAtools_1.0.0.zip(r-4.6)OAtools_1.0.0.zip(r-4.5)
OAtools_1.0.0.tgz(r-4.6-any)OAtools_1.0.0.tgz(r-4.5-any)
OAtools_1.0.0.tar.gz(r-4.7-any)OAtools_1.0.0.tar.gz(r-4.6-any)
OAtools_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OAtools/json (API)

# Install 'OAtools' in R:
install.packages('OAtools', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/uwvirology-ngs/oatools/issues

Datasets:
  • example_se - Example OpenArray Gene Expression Data Contained in a SummarizedExperiment

On BioConductor:OAtools-1.1.0(bioc 3.24)OAtools-1.0.0(bioc 3.23)

qpcrgeneexpressiondataimportregression

5.04 score 80 downloads 10 exports 107 dependencies

Last updated from:1cc067d9f1 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE187
linux-devel-x86_64NOTE1194
source / vignettesOK895
linux-release-x86_64NOTE1201
macos-release-arm64NOTE578
macos-oldrel-arm64NOTE756
windows-develNOTE320
windows-releaseNOTE323
windows-oldrelNOTE314
wasm-releaseOK193

Exports:buildAppcomputeModelsdeterminePCRResultsexcelToSEgenerateReportplotCrtplotModelplotOverviewplotQCseToQPCRBatch

Dependencies:abindaskpassbase64encbasiliskBiobaseBiocGenericsbslibcachemcellrangerclicommonmarkcpp11crayoncrosstalkcurldata.tableDelayedArraydigestdir.expirydplyrDTevaluatefarverfastmapfilelockfontawesomefsgenericsGenomicRangesggplot2gluegtableherehighrhmshtmltoolshtmlwidgetshttpuvhttrIRangesisobandjanitorjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpillarpkgconfigplotlypngprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppTOMLReadqPCRreadxlrematchreticulaterlangrmarkdownrprojrootS4ArraysS4VectorsS7sassscalesSeqinfoshinysnakecasesourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangetinytexutf8vctrsviridisLitewithrwritexlxfunxtableXVectoryaml

Analyzing OpenArray Gene Expression Data with OAtools

Aidan Shea

Rendered fromOAtools.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-30
Started: 2025-09-02