# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "OSTA" in publications use:'
type: software
license: CC-BY-4.0
title: 'OSTA: Orchestrating Spatial Transcriptomics Analysis with Bioconductor'
version: 1.2.2
doi: 10.1101/2025.11.20.688607
abstract: This package contains source files for the "Orchestrating Spatial Transcriptomics
  Analysis with Bioconductor" online book. This book provides interactive examples
  and discussion on key principles of computational analysis workflows for spatial
  transcriptomics data using Bioconductor in R. The book contains chapters describing
  individual analysis steps as well as extended workflows, each with examples including
  R code and datasets.
authors:
- family-names: Crowell
  given-names: Helena L.
  email: helena@crowell.eu
  orcid: https://orcid.org/0000-0002-4801-1767
- family-names: Robinson
  given-names: Mark D.
  email: mark.robinson@mls.uzh.ch
  orcid: https://orcid.org/0000-0002-3048-5518
- family-names: Hicks
  given-names: Stephanie C.
  email: shicks19@jhu.edu
  orcid: https://orcid.org/0000-0002-7858-0231
- family-names: Weber
  given-names: Lukas M.
  email: weberlm3@gmail.com
  orcid: https://orcid.org/0000-0002-3282-1730
preferred-citation:
  type: article
  title: Orchestrating spatial transcriptomics analysis with Bioconductor
  authors:
  - name: Crowell
  - family-names: L
    given-names: Helena
  - name: Dong
  - name: Yixing
  - name: Billato
  - name: Ilaria
  - name: Cai
  - name: Peiying
  - name: Emons
  - name: Martin
  - name: Gunz
  - name: Samuel
  - name: Guo
  - name: Boyi
  - name: Li
  - name: Mengbo
  - name: Mahmoud
  - name: Alexandru
  - name: Manukyan
  - name: Artür
  - name: Pagès
  - name: Hervé
  - name: Panwar
  - name: Pratibha
  - name: Rao
  - name: Shreya
  - name: Sargeant
  - family-names: J
    given-names: Callum
  - family-names: Kern
    given-names: Shepherd
  - name: Lori
  - name: Ramos
  - name: Marcel
  - name: Sun
  - name: Jieran
  - name: Totty
  - name: Michael
  - name: Carey
  - family-names: J
    given-names: Vincent
  - name: Chen
  - name: Yunshun
  - name: Collado-Torres
  - name: Leonardo
  - name: Ghazanfar
  - name: Shila
  - name: Hansen
  - family-names: D
    given-names: Kasper
  - name: Martinowich
  - name: Keri
  - name: Maynard
  - family-names: R
    given-names: Kristen
  - name: Patrick
  - name: Ellis
  - name: Righelli
  - name: Dario
  - name: Risso
  - name: Davide
  - name: Tiberi
  - name: Simone
  - name: Waldron
  - name: Levi
  - name: Gottardo
  - name: Raphael
  - name: Robinson
  - family-names: D
    given-names: Mark
  - name: Hicks
  - family-names: C
    given-names: Stephanie
  - name: Weber
  - family-names: M
    given-names: Lukas
  doi: 10.1101/2025.11.20.688607
  journal: bioRxiv
  year: '2025'
repository: https://bioconductor.org/
repository-code: https://github.com/lmweber/OSTA
commit: de4d0c826c43ceddcaed58dda37868dbcf512d80
url: https://github.com/lmweber/OSTA
date-released: '2026-07-10'
contact:
- family-names: Weber
  given-names: Lukas M.
  email: weberlm3@gmail.com
  orcid: https://orcid.org/0000-0002-3282-1730