| Title: | Ob/ob Mice Data on Normal and High Fat Diet |
|---|---|
| Description: | The package provide RNA-seq count for 2 strains of mus musclus; Wild type and Ob/Ob. Each strain was divided into two groups, and each group received either chow diet or high fat diet. RNA expression was measured after 20 weeks in 7 tissues. |
| Authors: | Omar Elashkar [aut, cre] (ORCID: <https://orcid.org/0000-0002-5505-778X>), Mahmoud Ahmed [aut] (ORCID: <https://orcid.org/0000-0002-4377-6541>) |
| Maintainer: | Omar Elashkar <[email protected]> |
| License: | GPL-3 |
| Version: | 1.20.0 |
| Built: | 2026-10-10 11:15:03 UTC |
| Source: | https://github.com/bioc/ObMiTi |
ObMiTi packageTitle: Ob/ob Mice Data on Normal and High Fat Diet The package provide RNA-seq count for 2 strains of mus musclus; Wild type and Ob/Ob. Each strain was divided into two groups, and each group received either chow diet or high fat diet. RNA expression was measured after 12 weeks in 7 tissues.
The dataset can be accessed through the
ExperimentHub as a RangedSummarizedExperiment
object contains:
The read counts matrix.
The phenotype data of the samples
The feature data and annotation of the peaks.
extra details about the sample and associated phenotype
studies. This is a data.frame of bibliography information of
the studies from which the samples were collected for.
# load the data object library(ExperimentHub) # query package resources on ExperimentHub eh <- ExperimentHub() query(eh, "ObMiTi") # load data from ExperimentHub ob_counts <- query(eh, "ObMiTi")[[1]] # print object ob_counts# load the data object library(ExperimentHub) # query package resources on ExperimentHub eh <- ExperimentHub() query(eh, "ObMiTi") # load data from ExperimentHub ob_counts <- query(eh, "ObMiTi")[[1]] # print object ob_counts