Package: Oscope 1.42.0

Ning Leng

Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Authors:Ning Leng

Oscope_1.42.0.tar.gz
Oscope_1.42.0.zip(r-4.7)Oscope_1.42.0.zip(r-4.6)Oscope_1.42.0.zip(r-4.5)
Oscope_1.42.0.tgz(r-4.6-any)Oscope_1.42.0.tgz(r-4.5-any)
Oscope_1.42.0.tar.gz(r-4.7-any)Oscope_1.42.0.tar.gz(r-4.6-any)
Oscope_1.42.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Oscope/json (API)
NEWS

# Install 'Oscope' in R:
install.packages('Oscope', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Oscope-1.43.0(bioc 3.24)Oscope-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologystatisticalmethodrnaseqsequencinggeneexpression

5.03 score 1 packages 18 scripts 492 downloads 11 mentions 17 exports 44 dependencies

Last updated from:b19dd2ad0d (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR156
linux-devel-x86_64NOTE172
source / vignettesOK328
linux-release-x86_64NOTE211
macos-release-arm64NOTE138
macos-oldrel-arm64NOTE127
windows-develNOTE145
windows-releaseNOTE121
windows-oldrelNOTE137
wasm-releaseOK139

Exports:AbsCorCalcMVFlagClusterFormatSineOutImpShiftNISFunNormForSineOpt2ShiftOscopeENIOscopeKMOscopeSinePermuCutPipeRPipeShiftCDFscanKSineFunSineOptim

Dependencies:BHBiocParallelbitopsblockmodelingbriocallrcaToolscliclustercodetoolscpp11crayondescdiffobjEBSeqevaluateformatRfsfutile.loggerfutile.optionsgluegplotsgtoolsjsonliteKernSmoothlambda.rlatticelifecyclemagrittrMatrixpkgbuildpkgloadpraiseprocessxpsR6RcppRcppEigenrlangrprojrootsnowtestthatwaldowithr

Oscope_vigette

Rendered fromOscope_vignette.Rnwusingutils::Sweaveon Jun 02 2026.

Last update: 2015-07-30
Started: 2015-07-30