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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PADOG" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)'
version: 1.54.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PADOG
abstract: This package implements a general purpose gene set analysis method called
  PADOG that downplays the importance of genes that apear often accross the sets of
  genes to be analyzed. The package provides also a benchmark for gene set analysis
  methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO
  package.
authors:
- family-names: Tarca
  given-names: Adi L.
  email: atarca@med.wayne.edu
- email: zhonghui.xu@gmail.com
preferred-citation:
  type: article
  title: Down-weighting overlapping genes improves gene set analysis
  authors:
  - family-names: Tarca
    given-names: Adi L.
    email: atarca@med.wayne.edu
  - family-names: Draghici
    given-names: Sorin
  - family-names: Bhatti
    given-names: Gaurav
  - family-names: Romero
    given-names: Roberto
  journal: BMC Bioinformatics
  year: '2012'
  volume: '13'
  issue: '136'
repository: https://bioc-release.r-universe.dev
commit: b12f8bd6cb139ffaa1f39a0310ac955eef88e12c
date-released: '2020-01-31'
contact:
- family-names: Tarca
  given-names: Adi L.
  email: atarca@med.wayne.edu
references:
- type: article
  title: A Comparison of Gene Set Analysis Methods in Terms of Sensitivity, Prioritization
    and Specificity
  authors:
  - family-names: Tarca
    given-names: Adi L.
  - family-names: Bhatti
    given-names: Gaurav
  - family-names: Romero
    given-names: Roberto
  journal: PLoS One
  year: '2013'
  volume: '8'
  issue: '11'