Package: PAST 1.28.0

Thrash Adam

PAST: Pathway Association Study Tool (PAST)

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

Authors:Thrash Adam [cre, aut], DeOrnellis Mason [aut]

PAST_1.28.0.tar.gz
PAST_1.28.0.zip(r-4.7)PAST_1.28.0.zip(r-4.6)PAST_1.28.0.zip(r-4.5)
PAST_1.28.0.tgz(r-4.6-any)PAST_1.28.0.tgz(r-4.5-any)
PAST_1.28.0.tar.gz(r-4.7-any)PAST_1.28.0.tar.gz(r-4.6-any)
PAST_1.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PAST/json (API)
NEWS

# Install 'PAST' in R:
install.packages('PAST', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igbb/past/issues

On BioConductor:PAST-1.29.0(bioc 3.24)PAST-1.28.0(bioc 3.23)

pathwaysgenesetenrichment

5.70 score 5 stars 7 scripts 2.3k mentions 5 exports 79 dependencies

Last updated from:898da6ebb4 (on RELEASE_3_23). Checks:8 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING197
linux-devel-x86_64WARNING516
source / vignettesOK331
linux-release-x86_64WARNING521
macos-release-arm64WARNING362
macos-oldrel-arm64WARNING293
windows-develWARNING457
windows-releaseWARNING426
windows-oldrelWARNING434
wasm-releaseOK152

Exports:assign_SNPs_to_genesfind_pathway_significanceload_GWAS_dataload_LDplot_pathways

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayoncurlDelayedArraydoParalleldplyrfarverforeachformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigplyrqvalueR6RColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyselectutf8vctrsviridisLitewithrXMLXVectoryaml

PAST

Adam Thrash

Rendered frompast.Rmdusingknitr::rmarkdownon Jun 19 2026.

Last update: 2020-03-11
Started: 2019-03-01