Package: PECA 1.48.0

Tomi Suomi

PECA: Probe-level Expression Change Averaging

Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.

Authors:Tomi Suomi, Jukka Hiissa, Laura L. Elo

PECA_1.48.0.tar.gz
PECA_1.48.0.zip(r-4.7)PECA_1.48.0.zip(r-4.6)PECA_1.48.0.zip(r-4.5)
PECA_1.48.0.tgz(r-4.6-any)PECA_1.48.0.tgz(r-4.5-any)
PECA_1.48.0.tar.gz(r-4.7-any)PECA_1.48.0.tar.gz(r-4.6-any)
PECA_1.48.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
PECA/json (API)
NEWS

# Install 'PECA' in R:
install.packages('PECA', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:PECA-1.49.0(bioc 3.24)PECA-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareproteomicsmicroarraydifferentialexpressiongeneexpressionexonarraydifferentialsplicing

4.30 score 10 scripts 437 downloads 17 mentions 5 exports 91 dependencies

Last updated from:31763c7017 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR229
linux-devel-x86_64NOTE303
source / vignettesOK332
linux-release-x86_64NOTE342
macos-release-arm64NOTE137
macos-oldrel-arm64NOTE168
windows-develNOTE187
windows-releaseNOTE380
windows-oldrelNOTE206
wasm-releaseOK171

Exports:PECA_AffyBatchPECA_CELPECA_dfPECA_tsvPECASI

Dependencies:affyaffyioannotateAnnotationDbiaroma.affymetrixaroma.apdaroma.corearoma.lightaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiocParallelBiostringsbitbit64blobbootcachemclicodetoolscpp11crayoncurlDBIdigestDNAcopyfastmapformatRfutile.loggerfutile.optionsfuturegenefiltergenericsglobalsgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalistenvlme4MASSMatrixMatrixGenericsmatrixStatsmemoisemimeminqanlmenloptropensslparallellypkgconfigpngpreprocessCorePSCBSR.cacheR.devicesR.filesetsR.hugeR.methodsS3R.ooR.rspR.utilsR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangROTSRSQLiteS4VectorsSeqinfosnowstatmodsurvivalsysvctrsXMLxtableXVector

PECA: Probe-level Expression Change Averaging

Rendered fromPECA.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2015-06-08
Started: 2013-12-07

Readme and manuals

Help Manual

Help pageTopics
PECA differential gene expressionPECA PECA_AffyBatch PECA_CEL PECA_df PECA_tsv
PECA splicing indexPECASI