To cite package ‘PRONE’ in publications use:

  Arend L, Adamowicz K, Schmidt JR, Burankova Y, Zolotareva O, Tsoy O,
  Pauling JK, Kalkhof S, Baumbach J, List M, Laske T (2025).
  “Systematic evaluation of normalization approaches in tandem mass tag
  and label-free protein quantification data using PRONE.” _Briefings
  in Bioinformatics_. doi:10.1093/bib/bbaf201
  <https://doi.org/10.1093/bib/bbaf201>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE},
    author = {Lis Arend and Klaudia Adamowicz and Johannes R. Schmidt and Yuliya Burankova and Olga Zolotareva and Olga Tsoy and Josch K. Pauling and Stefan Kalkhof and Jan Baumbach and Markus List and Tanja Laske},
    year = {2025},
    journal = {Briefings in Bioinformatics},
    doi = {10.1093/bib/bbaf201},
  }