# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PSMatch" in publications use:'
type: software
license: Artistic-2.0
title: 'PSMatch: Handling and Managing Peptide Spectrum Matches'
version: 1.16.0
doi: 10.31219/osf.io/62v9p_v2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PSMatch
abstract: The PSMatch package helps proteomics practitioners to load, handle and manage
  Peptide Spectrum Matches. It provides functions to model peptide-protein relations
  as adjacency matrices and connected components, visualise these as graphs and make
  informed decision about shared peptide filtering. The package also provides functions
  to calculate and visualise MS2 fragment ions.
authors:
- family-names: Gatto
  given-names: Laurent
  email: laurent.gatto@uclouvain.be
  orcid: https://orcid.org/0000-0002-1520-2268
- family-names: Rainer
  given-names: Johannes
  email: Johannes.Rainer@eurac.edu
  orcid: https://orcid.org/0000-0002-6977-7147
- family-names: Gibb
  given-names: Sebastian
  email: mail@sebastiangibb.de
  orcid: https://orcid.org/0000-0001-7406-4443
preferred-citation:
  type: manual
  title: 'PSMatch: an R/Bioconductor package to explore proteomics identification
    data.'
  authors:
  - family-names: Deflandre
    given-names: Guillaume
  - family-names: Gibbs
    given-names: Sebastian
  - family-names: Gatto
    given-names: Laurent
    email: laurent.gatto@uclouvain.be
    orcid: https://orcid.org/0000-0002-1520-2268
  year: '2025'
  doi: 10.31219/osf.io/62v9p_v2
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/RforMassSpectrometry/PSM
commit: ba337122c6bf31d075ac69eacd4d43b095e30be3
url: https://github.com/RforMassSpectrometry/PSM
date-released: '2026-04-28'
contact:
- family-names: Gatto
  given-names: Laurent
  email: laurent.gatto@uclouvain.be
  orcid: https://orcid.org/0000-0002-1520-2268