# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "PathNet" in publications use:'
type: software
license: GPL-3.0-only
title: 'PathNet: An R package for pathway analysis using topological information'
version: 1.52.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PathNet
abstract: 'PathNet uses topological information present in pathways and differential
  expression levels of genes (obtained from microarray experiment) to identify pathways
  that are 1) significantly enriched and 2) associated with each other in the context
  of differential expression. The algorithm is described in: PathNet: A tool for pathway
  analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source
  Code for Biology and Medicine 2012 Sep 24;7(1):10.'
authors:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com
- family-names: Dutta
  given-names: Bhaskar
  email: bhaskar.dutta@gmail.com
- family-names: Wallqvist
  given-names: Anders
  email: awallqvist@bhsai.org
- family-names: Reifman
  given-names: Jaques
  email: jreifman@bhsai.org
preferred-citation:
  type: article
  title: 'PathNet: A tool for pathway analysis using topological information.'
  authors:
  - family-names: B
    given-names: Dutta
  - family-names: A
    given-names: Wallqvist
  - family-names: J.
    given-names: Reifman
  journal: Source Code for Biology and Medicine
  year: '2012'
  volume: '7'
  issue: '1'
  start: '10'
repository: https://bioc-release.r-universe.dev
commit: 5d260cf0e0f8d579c46d48102a2940fb495d411a
date-released: '2026-04-28'
contact:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com