# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "Pedixplorer" in publications use:'
type: software
license: Artistic-2.0
title: 'Pedixplorer: Pedigree Functions'
version: 1.8.0
doi: 10.1093/bioinformatics/btaf329
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Pedixplorer
abstract: Routines to handle family data with a Pedigree object. The initial purpose
  was to create correlation structures that describe family relationships such as
  kinship and identity-by-descent, which can be used to model family data in mixed
  effects models, such as in the coxme function. Also includes a tool for Pedigree
  drawing which is focused on producing compact layouts without intervention. Recent
  additions include utilities to trim the Pedigree object with various criteria, and
  kinship for the X chromosome.
authors:
- family-names: Le Nezet
  given-names: Louis
  email: louislenezet@gmail.com
  orcid: https://orcid.org/0009-0000-0202-2703
- family-names: Sinnwell
  given-names: Jason
  email: sinnwell.jason@mayo.edu
- family-names: Therneau
  given-names: Terry
preferred-citation:
  type: article
  title: 'Pedixplorer: a Bioconductor package to streamline pedigree design and visualization'
  authors:
  - family-names: Le Nézet
    given-names: Louis
  - family-names: Sinnwell
    given-names: Jason
    email: sinnwell.jason@mayo.edu
  - family-names: Letko
    given-names: Anna
  - family-names: André
    given-names: Catherine
  - family-names: Quignon
    given-names: Pascale
  journal: Bioinformatics
  year: '2025'
  volume: '41'
  issue: '6'
  doi: 10.1093/bioinformatics/btaf329
  url: https://doi.org/10.1093/bioinformatics/btaf329
  notes: R package version 1.0.0
  start: btaf329
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/LouisLeNezet/Pedixplorer
commit: 98d7b527b4650bfbb568ed1121f73059784a6356
url: https://louislenezet.github.io/Pedixplorer/
date-released: '2025-08-26'
contact:
- family-names: Le Nezet
  given-names: Louis
  email: louislenezet@gmail.com
  orcid: https://orcid.org/0009-0000-0202-2703