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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PepSetTest" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'PepSetTest: Peptide Set Test'
version: 1.6.0
doi: 10.32614/CRAN.package.PepSetTest
abstract: Peptide Set Test (PepSetTest) is a peptide-centric strategy to infer differentially
  expressed proteins in LC-MS/MS proteomics data. This test detects coordinated changes
  in the expression of peptides originating from the same protein and compares these
  changes against the rest of the peptidome. Compared to traditional aggregation-based
  approaches, the peptide set test demonstrates improved statistical power, yet controlling
  the Type I error rate correctly in most cases. This test can be valuable for discovering
  novel biomarkers and prioritizing drug targets, especially when the direct application
  of statistical analysis to protein data fails to provide substantial insights.
authors:
- family-names: Wang
  given-names: Junmin
  email: jmwang.bio@gmail.com
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/JmWangBio/PepSetTest
commit: f4a08198c4318d856c39f6e95e4df0a0c2e853d8
url: https://github.com/JmWangBio/PepSetTest
date-released: '2026-04-28'
contact:
- family-names: Wang
  given-names: Junmin
  email: jmwang.bio@gmail.com