# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "QDNAseq" in publications use:'
type: software
license: GPL-1.0-only
title: 'QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations'
version: 1.48.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.QDNAseq
abstract: Quantitative DNA sequencing for chromosomal aberrations. The genome is divided
  into non-overlapping fixed-sized bins, number of sequence reads in each counted,
  adjusted with a simultaneous two-dimensional loess correction for sequence mappability
  and GC content, and filtered to remove spurious regions in the genome. Downstream
  steps of segmentation and calling are also implemented via packages DNAcopy and
  CGHcall, respectively.
authors:
- family-names: Scheinin
  given-names: Ilari
- family-names: Sie
  given-names: Daoud
  email: d.sie@vumc.nl
- family-names: Bengtsson
  given-names: Henrik
preferred-citation:
  type: article
  title: DNA copy number analysis of fresh and formalin-fixed specimens by shallow
    whole-genome sequencing with identification and exclusion of problematic regions
    in the genome assembly
  authors:
  - family-names: Scheinin
    given-names: Ilari
  - family-names: Sie
    given-names: Daoud
    email: d.sie@vumc.nl
  - family-names: Bengtsson
    given-names: Henrik
  - family-names: Wiel
    given-names: Mark A
    name-particle: van de
  - family-names: Olshen
    given-names: Adam B
  - family-names: Thuijl
    given-names: Hinke F
    name-particle: van
  - family-names: Essen
    given-names: Hendrik F
    name-particle: van
  - family-names: Eijk
    given-names: Paul P
  - family-names: Rustenburg
    given-names: Francois
  - family-names: Meijer
    given-names: Gerrit A
  - family-names: Reijneveld
    given-names: Jaap C
  - family-names: Wesseling
    given-names: Pieter
  - family-names: Pinkel
    given-names: Daniel
  - family-names: Albertson
    given-names: Donna G
  - family-names: Ylstra
    given-names: Bauke
  year: '2014'
  journal: Genome Research
  volume: '24'
  start: '2022'
  end: '2032'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/ccagc/QDNAseq
commit: a403328286782687f575a1633a51de63f8462263
url: https://github.com/ccagc/QDNAseq
date-released: '2026-04-28'
contact:
- family-names: Sie
  given-names: Daoud
  email: d.sie@vumc.nl