# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "RCM" in publications use:'
type: software
license: GPL-2.0-only
title: 'RCM: Fit row-column association models with the negative binomial distribution
  for the microbiome'
version: 1.28.0
doi: 10.1371/journal.pone.0205474
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RCM
abstract: Combine ideas of log-linear analysis of contingency table, flexible response
  function estimation and empirical Bayes dispersion estimation for explorative visualization
  of microbiome datasets. The package includes unconstrained as well as constrained
  analysis. In addition, diagnostic plot to detect lack of fit are available.
authors:
- family-names: Hawinkel
  given-names: Stijn
  email: stijn.hawinkel@psb.ugent.be
  orcid: https://orcid.org/0000-0002-4501-5180
preferred-citation:
  type: article
  title: A unified framework for unconstrained and constrained ordination of microbiome
    read count data
  authors:
  - family-names: Hawinkel
    given-names: Stijn
    email: stijn.hawinkel@psb.ugent.be
    orcid: https://orcid.org/0000-0002-4501-5180
  - family-names: Kerckhof
    given-names: Frederiek-Maarten
  - family-names: Bijnens
    given-names: Luc
  - family-names: Thas
    given-names: Olivier
  journal: PLOS ONE
  volume: '14'
  issue: '2'
  month: '2'
  year: '2019'
  publisher:
    name: Public Library of Science
  doi: 10.1371/journal.pone.0205474
  start: '-19'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/CenterForStatistics-UGent/RCM
commit: 708c69f36cf2c3a7652493d89445a7f8aee7972d
url: https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
date-released: '2026-04-28'
contact:
- family-names: Hawinkel
  given-names: Stijn
  email: stijn.hawinkel@psb.ugent.be
  orcid: https://orcid.org/0000-0002-4501-5180