Package: RDRToolbox 1.62.0
RDRToolbox: A package for nonlinear dimension reduction with Isomap and LLE.
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Authors:
RDRToolbox_1.62.0.tar.gz
RDRToolbox_1.62.0.zip(r-4.7)RDRToolbox_1.62.0.zip(r-4.6)RDRToolbox_1.62.0.zip(r-4.5)
RDRToolbox_1.62.0.tgz(r-4.6-any)RDRToolbox_1.62.0.tgz(r-4.5-any)
RDRToolbox_1.62.0.tar.gz(r-4.7-any)RDRToolbox_1.62.0.tar.gz(r-4.6-any)
RDRToolbox_1.62.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RDRToolbox/json (API)
| # Install 'RDRToolbox' in R: |
| install.packages('RDRToolbox', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RDRToolbox-1.63.0(bioc 3.24)RDRToolbox-1.62.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
dimensionreductionfeatureextractionvisualizationclusteringmicroarray
Last updated from:2999c62e78 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 191 | ||
| linux-devel-x86_64 | NOTE | 177 | ||
| source / vignettes | OK | 178 | ||
| linux-release-x86_64 | NOTE | 198 | ||
| macos-release-arm64 | NOTE | 87 | ||
| macos-oldrel-arm64 | NOTE | 119 | ||
| windows-devel | NOTE | 103 | ||
| windows-release | NOTE | 101 | ||
| windows-oldrel | NOTE | 113 | ||
| wasm-release | OK | 148 |
Exports:DBIndexgenerateDataIsomapLLEplotDRSwissRoll
Dependencies:base64encbslibcachemclidigestevaluatefastmapfontawesomefshighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclemagrittrMASSmemoisemimeR6rappdirsrglrlangrmarkdownsasstinytexxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Davis-Bouldin-Index | DBIndex |
| Simulator for gene expression data | generateData |
| Isomap | Isomap |
| Locally Linear Embedding | LLE |
| Plotting tool for two and three dimensional data | plotDR |
| The Swiss Roll dataset | SwissRoll |
