Package: RNAmodR.Data 1.26.0

Felix G.M. Ernst

RNAmodR.Data: Example data for the RNAmodR package

RNAmodR.Data contains example data, which is used for vignettes and example workflows in the RNAmodR and dependent packages.

Authors:Felix G.M. Ernst [aut, cre], Denis L.J. Lafontaine [ctb, fnd]

RNAmodR.Data_1.26.0.tar.gz
RNAmodR.Data_1.26.0.tar.gz(r-4.7-any)RNAmodR.Data_1.26.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RNAmodR.Data/json (API)

# Install 'RNAmodR.Data' in R:

install.packages('RNAmodR.Data', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/felixernst/rnamodr.data/issues

On BioConductor:RNAmodR.Data-1.27.0(data/experiment 3.24)RNAmodR.Data-1.26.0(data/experiment 3.23)

experimentdata sequencingdata rnaseqdata datapkg

4.97 score 31 scripts 21 exports 111 dependencies

Last updated from:054165b2b4 (on RELEASE_3_23). Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time	Files	Syslog
bioc-checks	WARNING	178
linux-devel	NOTE	469
source / vignettes	OK	269
linux-release	NOTE	430

Exports:RNAmodR.Data.example.AAS.fasta RNAmodR.Data.example.AAS.gff3 RNAmodR.Data.example.bam.1 RNAmodR.Data.example.bam.2 RNAmodR.Data.example.bam.3 RNAmodR.Data.example.bud23.1 RNAmodR.Data.example.bud23.2 RNAmodR.Data.example.fasta RNAmodR.Data.example.gff3 RNAmodR.Data.example.man.fasta RNAmodR.Data.example.man.gff3 RNAmodR.Data.example.RMS.1 RNAmodR.Data.example.RMS.2 RNAmodR.Data.example.RMS.fasta RNAmodR.Data.example.RMS.gff3 RNAmodR.Data.example.trm8.1 RNAmodR.Data.example.trm8.2 RNAmodR.Data.example.wt.1 RNAmodR.Data.example.wt.2 RNAmodR.Data.example.wt.3 RNAmodR.Data.snoRNAdb

Dependencies:abind AnnotationDbi AnnotationForge AnnotationHub AnnotationHubData askpass BH Biobase BiocBaseUtils BiocCheck BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion biocViews Biostrings bit bit64 bitops blob cachem callr cigarillo cli codetools commonmark cpp11 crayon curl DBI dbplyr DelayedArray dplyr evaluate ExperimentHub ExperimentHubData fastmap filelock formatR futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges glue graph highr httr httr2 IRanges jsonlite KEGGREST knitr lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl OrganismDbi otel pillar pkgconfig png processx ps purrr R6 rappdirs RBGL RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer RUnit rvest S4Arrays S4Vectors selectr Seqinfo snow SparseArray stringdist stringi stringr SummarizedExperiment sys tibble tidyr tidyselect UCSC.utils utf8 vctrs withr xfun XML xml2 XVector yaml

RNAmodR.Data: example data for RNAmodR packages

Available resources | snoRNAdb | Sessioninfo | References

Rendered fromRNAmodR.Data.Rmdusingknitr::rmarkdown

Last update: 2020-01-14
Started: 2019-04-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
RNAmodR example data for tests and man pages	example.man.fasta RNAmodR.Data.example.man.fasta RNAmodR.Data.example.man.gff3
RNAmodR.Data	RNAmodR.Data-package RNAmodR.Data
RNAmodR AlkAnilineSeq example data	RNAmodR.Data.AAS RNAmodR.Data.example.AAS.fasta RNAmodR.Data.example.AAS.gff3 RNAmodR.Data.example.bud23.1 RNAmodR.Data.example.bud23.2 RNAmodR.Data.example.trm8.1 RNAmodR.Data.example.trm8.2 RNAmodR.Data.example.wt.1 RNAmodR.Data.example.wt.2 RNAmodR.Data.example.wt.3
RNAmodR general example data	RNAmodR.Data.example RNAmodR.Data.example.bam.1 RNAmodR.Data.example.bam.2 RNAmodR.Data.example.bam.3 RNAmodR.Data.example.fasta RNAmodR.Data.example.gff3
RNAmodR RiboMethSeq example data	RNAmodR.Data.example.RMS.1 RNAmodR.Data.example.RMS.2 RNAmodR.Data.example.RMS.fasta RNAmodR.Data.example.RMS.gff3 RNAmodR.Data.RMS
snoRNAdb data	RNAmodR.Data.snoRNAdb

Usage by other packages (reverse dependencies)