Package: RNAseqData.HNRNPC.bam.chr14 0.50.0
Hervé Pagès
RNAseqData.HNRNPC.bam.chr14: Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Authors:
RNAseqData.HNRNPC.bam.chr14_0.50.0.tar.gz
RNAseqData.HNRNPC.bam.chr14_0.50.0.tar.gz(r-4.7-any)RNAseqData.HNRNPC.bam.chr14_0.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RNAseqData.HNRNPC.bam.chr14/json (API)
| # Install 'RNAseqData.HNRNPC.bam.chr14' in R: |
| install.packages('RNAseqData.HNRNPC.bam.chr14', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RNAseqData.HNRNPC.bam.chr14-0.51.1(data/experiment 3.24)RNAseqData.HNRNPC.bam.chr14-0.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomehomo_sapiens_datasequencingdatageoncirnaseqdataarrayexpressdatapkg
Last updated from:6164403128 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 175 | ||
| linux-devel | OK | 275 | ||
| source / vignettes | OK | 259 | ||
| linux-release | OK | 253 |
Exports:RNAseqData.HNRNPC.bam.chr14_BAMFILESRNAseqData.HNRNPC.bam.chr14_RUNNAMES
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells | RNAseqData.HNRNPC.bam.chr14-package RNAseqData.HNRNPC.bam.chr14 RNAseqData.HNRNPC.bam.chr14_BAMFILES RNAseqData.HNRNPC.bam.chr14_RUNNAMES |