Package: RRBSdata 1.32.0

Katja Hebestreit

RRBSdata: An RRBS data set with 12 samples and 10,000 simulated DMRs

RRBS data set comprising 12 samples with simulated differentially methylated regions (DMRs).

Authors:Katja Hebestreit, Hans-Ulrich Klein

RRBSdata_1.32.0.tar.gz
RRBSdata_1.32.0.tar.gz(r-4.7-any)RRBSdata_1.32.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RRBSdata/json (API)

# Install 'RRBSdata' in R:

install.packages('RRBSdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

diffMethCpGs - The differentially methylated CpG sites.
islands - CpG islands with information on DMRs.
rrbs - An RRBS data set with 12 samples and 10,000 simulated DMRs.

On BioConductor:RRBSdata-1.33.0(data/experiment 3.24)RRBSdata-1.32.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata cancerdata sequencingdata cpgislanddata datapkg

3.30 score 1 scripts 0 exports 80 dependencies

Last updated from:a9be0e25a5 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time	Files	Syslog
bioc-checks	ERROR	152
linux-devel	OK	420
source / vignettes	OK	737
linux-release	OK	334

Exports:

Dependencies:abind annotate AnnotationDbi askpass betareg BH Biobase BiocGenerics BiocIO BiocParallel Biostrings BiSeq bit bit64 bitops blob cachem cigarillo cli codetools cpp11 crayon curl DBI DelayedArray fastmap flexmix formatR Formula futile.logger futile.options generics GenomicAlignments GenomicRanges globaltest glue httr IRanges jsonlite KEGGREST lambda.r lattice lifecycle lmtest lokern Matrix MatrixGenerics matrixStats memoise mime modeltools nnet openssl pkgconfig png R6 RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Arrays S4Vectors sandwich Seqinfo sfsmisc snow SparseArray SummarizedExperiment survival sys vctrs XML xtable XVector yaml zoo

An RRBS data set with 12 samples and 10,000 simulated DMRs.

Introduction | Simulation | Data objects

Rendered fromRRBSdata.Rnwusingutils::Sweave

Last update: 2015-01-29
Started: 2014-10-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The differentially methylated CpG sites.	diffMethCpGs
CpG islands with information on DMRs.	islands
An RRBS data set with 12 samples and 10,000 simulated DMRs.	rrbs

Usage by other packages (reverse dependencies)