| Title: | CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project |
|---|---|
| Description: | Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot. |
| Authors: | Przemyslaw Biecek <[email protected]> |
| Maintainer: | Marcin Kosinski <[email protected]> |
| License: | GPL-2 |
| Version: | 1.40.0 |
| Built: | 2026-10-10 11:10:05 UTC |
| Source: | https://github.com/bioc/RTCGA.CNV |
Package provides CNV datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA")
Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving+Data+Using+the+Data+Matrix
Converting RTCGA.CNV datasets from data.frames to Bioconductor classes is explained here convertTCGA.
ACC.CNV BLCA.CNV BRCA.CNV CESC.CNV CHOL.CNV COAD.CNV COADREAD.CNV DLBC.CNV ESCA.CNV GBM.CNV GBMLGG.CNV HNSC.CNV KICH.CNV KIPAN.CNV KIRC.CNV KIRP.CNV LAML.CNV LGG.CNV LIHC.CNV LUAD.CNV LUSC.CNV MESO.CNV OV.CNV PAAD.CNV PCPG.CNV PRAD.CNV READ.CNV SARC.CNV SKCM.CNV STAD.CNV STES.CNV TGCT.CNV THCA.CNV THYM.CNV UCEC.CNV UCS.CNV UVM.CNVACC.CNV BLCA.CNV BRCA.CNV CESC.CNV CHOL.CNV COAD.CNV COADREAD.CNV DLBC.CNV ESCA.CNV GBM.CNV GBMLGG.CNV HNSC.CNV KICH.CNV KIPAN.CNV KIRC.CNV KIRP.CNV LAML.CNV LGG.CNV LIHC.CNV LUAD.CNV LUSC.CNV MESO.CNV OV.CNV PAAD.CNV PCPG.CNV PRAD.CNV READ.CNV SARC.CNV SKCM.CNV STAD.CNV STES.CNV TGCT.CNV THCA.CNV THYM.CNV UCEC.CNV UCS.CNV UVM.CNV
browseVignettes("RTCGA")
Data frames with CNV data.
http://gdac.broadinstitute.org/