Package 'RTCGA.RPPA'

Title: RPPA datasets from The Cancer Genome Atlas Project
Description: Package provides RPPA datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Protein+Array +Data+Format+Specification?src=search
Authors: Witold Chodor <[email protected]>
Maintainer: Marcin Kosinski <[email protected]>
License: GPL-2
Version: 1.40.0
Built: 2026-10-10 11:08:54 UTC
Source: https://github.com/bioc/RTCGA.RPPA

Help Index

RPPA datasets from TCGA project

Description

Package provides RPPA datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA"). RPPA data format is explained here https://wiki.nci.nih.gov/display/TCGA/Protein+Array+Data+Format+Specification?src=search. Converting RTCGA.RPPA to Bioconductor datasets' format is explained here convertTCGA.

Usage

ACC.RPPA

BLCA.RPPA

BRCA.RPPA

CESC.RPPA

CHOL.RPPA

COAD.RPPA

COADREAD.RPPA

DLBC.RPPA

ESCA.RPPA

GBM.RPPA

GBMLGG.RPPA

HNSC.RPPA

KICH.RPPA

KIPAN.RPPA

KIRC.RPPA

KIRP.RPPA

LGG.RPPA

LIHC.RPPA

LUAD.RPPA

LUSC.RPPA

MESO.RPPA

OV.RPPA

PAAD.RPPA

PCPG.RPPA

PRAD.RPPA

READ.RPPA

SARC.RPPA

SKCM.RPPA

STAD.RPPA

STES.RPPA

TGCT.RPPA

THCA.RPPA

THYM.RPPA

UCEC.RPPA

UCS.RPPA

UVM.RPPA

Value

Data frames with RPPA data.

Source

http://gdac.broadinstitute.org/

Examples

## Not run: 
browseVignettes("RTCGA")
browseVignettes("RTCGA.RPPA")

## End(Not run)