Package 'RTCGA.clinical'

Title: Clinical datasets from The Cancer Genome Atlas Project
Description: Package provides clinical datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Clinical data format is explained here https://wiki.nci.nih.gov/display/TCGA/Clinical+Data+Overview. Data from 2015-11-01 snapshot.
Authors: Marcin Kosinski <[email protected]>
Maintainer: Marcin Kosinski <[email protected]>
License: GPL-2
Version: 20151101.42.0
Built: 2026-10-10 11:09:50 UTC
Source: https://github.com/bioc/RTCGA.clinical

Help Index

Clinical datasets from TCGA project

Description

Package provides clinical datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA"). Clinical data format is explained here https://wiki.nci.nih.gov/display/TCGA/Clinical+Data+Overview.

Usage

ACC.clinical

BLCA.clinical

BRCA.clinical

CESC.clinical

CHOL.clinical

COAD.clinical

COADREAD.clinical

DLBC.clinical

ESCA.clinical

FPPP.clinical

GBM.clinical

GBMLGG.clinical

HNSC.clinical

KICH.clinical

KIPAN.clinical

KIRC.clinical

KIRP.clinical

LAML.clinical

LGG.clinical

LIHC.clinical

LUAD.clinical

LUSC.clinical

MESO.clinical

OV.clinical

PAAD.clinical

PCPG.clinical

PRAD.clinical

READ.clinical

SARC.clinical

SKCM.clinical

STAD.clinical

STES.clinical

TGCT.clinical

THCA.clinical

THYM.clinical

UCEC.clinical

UCS.clinical

UVM.clinical

Details

browseVignettes("RTCGA")

Value

Data frames with clinical data.

Source

http://gdac.broadinstitute.org/