Package 'RTCGA.mRNA'

Title: mRNA datasets from The Cancer Genome Atlas Project
Description: Package provides mRNA datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Gene+expression+data Data from 2015-11-01 snapshot.
Authors: Witold Chodor <[email protected]>
Maintainer: Marcin Kosinski <[email protected]>
License: GPL-2
Version: 1.40.0
Built: 2026-10-10 11:13:13 UTC
Source: https://github.com/bioc/RTCGA.mRNA

Help Index

mRNA datasets from TCGA project

Description

Package provides mRNA datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA"). mRNA data format is explained here https://wiki.nci.nih.gov/display/TCGA/Gene+expression+data. Converting RTCGA.mRNA datasets from data.frames to Bioconductor classes is explained here convertTCGA.

Usage

BRCA.mRNA

COAD.mRNA

COADREAD.mRNA

GBMLGG.mRNA

KIPAN.mRNA

KIRC.mRNA

KIRP.mRNA

LGG.mRNA

LUAD.mRNA

LUSC.mRNA

OV.mRNA

READ.mRNA

UCEC.mRNA

Details

browseVignettes("RTCGA")

Value

Data frames with mRNA data.

Source

http://gdac.broadinstitute.org/

Examples

## Not run: 
browseVignettes("RTCGA")

## End(Not run)