Package 'RTCGA.methylation'

Title: Methylation datasets from The Cancer Genome Atlas Project
Description: Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015-11-01 snapshot.
Authors: Marcin Kosinski [aut, cre], Witold Chodor [aut]
Maintainer: Marcin Kosinski <[email protected]>
License: GPL-2
Version: 1.40.0
Built: 2026-10-10 11:20:29 UTC
Source: https://github.com/bioc/RTCGA.methylation

Help Index

Methylation datasets from TCGA project

Description

Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA"). Methylation data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation. Converting RTCGA.methylation datasets from data.frames to Bioconductor classes is explained here convertTCGA.

Usage

BRCA.methylation

COAD.methylation

COADREAD.methylation

GBM.methylation

GBMLGG.methylation

KIPAN.methylation

KIRC.methylation

KIRP.methylation

LAML.methylation

LUAD.methylation

LUSC.methylation

OV.methylation2

OV.methylation1

READ.methylation

STAD.methylation

STES.methylation

UCEC.methylation

Details

browseVignettes("RTCGA")

Value

Data frames with methylation data.

Source

http://gdac.broadinstitute.org/

Examples

## Not run: 
browseVignettes("RTCGA")

## End(Not run)