| Title: | Mutations datasets from The Cancer Genome Atlas Project |
|---|---|
| Description: | Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot. |
| Authors: | Marcin Kosinski <[email protected]> |
| Maintainer: | Marcin Kosinski <[email protected]> |
| License: | GPL-2 |
| Version: | 20151101.42.0 |
| Built: | 2026-10-10 11:22:38 UTC |
| Source: | https://github.com/bioc/RTCGA.mutations |
Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA")
Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes.
ACC.mutations BLCA.mutations BRCA.mutations CESC.mutations CHOL.mutations COAD.mutations COADREAD.mutations DLBC.mutations ESCA.mutations GBMLGG.mutations GBM.mutations HNSC.mutations KICH.mutations KIPAN.mutations KIRC.mutations KIRP.mutations LAML.mutations LGG.mutations LIHC.mutations LUAD.mutations LUSC.mutations OV.mutations PAAD.mutations PCPG.mutations PRAD.mutations READ.mutations SKCM.mutations STAD.mutations STES.mutations SARC.mutations TGCT.mutations THCA.mutations UCEC.mutations UCS.mutations UVM.mutationsACC.mutations BLCA.mutations BRCA.mutations CESC.mutations CHOL.mutations COAD.mutations COADREAD.mutations DLBC.mutations ESCA.mutations GBMLGG.mutations GBM.mutations HNSC.mutations KICH.mutations KIPAN.mutations KIRC.mutations KIRP.mutations LAML.mutations LGG.mutations LIHC.mutations LUAD.mutations LUSC.mutations OV.mutations PAAD.mutations PCPG.mutations PRAD.mutations READ.mutations SKCM.mutations STAD.mutations STES.mutations SARC.mutations TGCT.mutations THCA.mutations UCEC.mutations UCS.mutations UVM.mutations
browseVignettes("RTCGA")
Data frames with mutations data.
http://gdac.broadinstitute.org/