Package: RTCGA
Title: The Cancer Genome Atlas Data Integration
Version: 1.42.0
Date: 2022-10-28
Authors@R: c(
    person("Marcin", "Kosinski", role = c("aut", "cre"),
    email = "m.p.kosinski@gmail.com"),
    person("Przemyslaw", "Biecek", role = c("ctb"),
    email = "przemyslaw.biecek@gmail.com"),
    person("Witold", "Chodor", role = c("ctb"),
    email = "witoldchodor@gmail.com")
    )
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: The Cancer Genome Atlas (TCGA) Data Portal provides a
        platform for researchers to search, download, and analyze data
        sets generated by TCGA. It contains clinical information,
        genomic characterization data, and high level sequence analysis
        of the tumor genomes. The key is to understand genomics to
        improve cancer care. RTCGA package offers download and
        integration of the variety and volume of TCGA data using
        patient barcode key, what enables easier data possession. This
        may have an benefcial infuence on impact on development of
        science and improvement of patients' treatment. Furthermore,
        RTCGA package transforms TCGA data to tidy form which is
        convenient to use.
BugReports: https://github.com/RTCGA/RTCGA/issues
URL: https://rtcga.github.io/RTCGA
License: GPL-2
LazyLoad: yes
Depends: R (>= 3.3.0)
Imports: XML, RCurl, assertthat, stringi, rvest, data.table, xml2,
        dplyr, purrr, survival, survminer, ggplot2, ggthemes, viridis,
        knitr, scales, rmarkdown, htmltools
Suggests: devtools, testthat, pander, Biobase, GenomicRanges, IRanges,
        S4Vectors, RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations,
        RTCGA.RPPA, RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation,
        RTCGA.CNV, magrittr, tidyr
biocViews: ImmunoOncology, Software, DataImport, DataRepresentation,
        Preprocessing, RNASeq, Survival, DNAMethylation,
        PrincipalComponent, Visualization
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 7.1.1
PackageStatus: Deprecated
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:41:52 UTC
RemoteUrl: https://github.com/bioc/RTCGA
RemoteRef: RELEASE_3_23
RemoteSha: a11abb98d39f63bd07f78bf6d6b0b9e9548c20c1
Packaged: 2026-10-01 12:08:03 UTC; root
Author: Marcin Kosinski [aut, cre],
  Przemyslaw Biecek [ctb],
  Witold Chodor [ctb]