# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RTNduals" in publications use:'
type: software
license: Artistic-2.0
title: 'RTNduals: Analysis of co-regulation and inference of ''dual regulons'''
version: 1.36.0
doi: 10.1093/bioinformatics/btz534
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RTNduals
abstract: RTNduals identifies co-regulatory loops between pairs of regulons inferred
  by the RTN package by evaluating their shared target genes. It infers dual regulons
  and tests whether regulator pairs exhibit cooperative or competitive influences
  on common targets.
authors:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
- family-names: Groeneveld
  given-names: Clarice
  email: clari.groeneveld@gmail.com
- family-names: Chagas
  given-names: Vinicius S.
- family-names: Groeneveld
  given-names: Clarice S.
- family-names: Robertson
  given-names: Gordon
- family-names: Meyer
  given-names: Kerstin B.
- family-names: Castro
  given-names: Mauro A. A.
preferred-citation:
  type: article
  title: 'RTNsurvival: an R/Bioconductor package for regulatory network survival analysis.'
  authors:
  - family-names: Chagas
    given-names: Vinicius
  - family-names: Groeneveld
    given-names: Clarice
    email: clari.groeneveld@gmail.com
  - family-names: Oliveira
    given-names: Kelin
  - family-names: Trefflich
    given-names: Sheyla
  - family-names: Almeida
    given-names: Rodrigo
    name-particle: de
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  - family-names: Jones
    given-names: Steven
  - family-names: Robertson
    given-names: Gordon
  - family-names: Castro
    given-names: Mauro
    email: mauro.a.castro@gmail.com
  journal: Bioinformatics
  year: '2019'
  doi: 10.1093/bioinformatics/btz534
  start: btz534
repository: https://bioc-release.r-universe.dev
commit: f58371a33d649c9a4caf8d02a3be18f54bdd32ea
date-released: '2026-04-28'
contact:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
- family-names: Groeneveld
  given-names: Clarice
  email: clari.groeneveld@gmail.com
references:
- type: article
  title: Regulators of genetic risk of breast cancer identified by integrative network
    analysis.
  authors:
  - family-names: Castro
    given-names: Mauro
  - family-names: Santiago
    given-names: Ines
    name-particle: de
  - family-names: Campbell
    given-names: Thomas
  - family-names: Vaughn
    given-names: Courtney
  - family-names: Hickey
    given-names: Theresa
  - family-names: Ross
    given-names: Edith
  - family-names: Tilley
    given-names: Wayne
  - family-names: Markowetz
    given-names: Florian
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  journal: Nature Genetics
  year: '2016'
  volume: '48'
  doi: 10.1038/ng.3458
  start: '33'