Package: RankProd 3.38.0
Francesco Del Carratore
RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis
Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.
Authors:
RankProd_3.38.0.tar.gz
RankProd_3.38.0.zip(r-4.7-any)RankProd_3.38.0.zip(r-4.6-any)RankProd_3.38.0.zip(r-4.5-any)
RankProd_3.38.0.tgz(r-4.6-any)RankProd_3.38.0.tgz(r-4.5-any)
RankProd_3.38.0.tar.gz(r-4.7-any)RankProd_3.38.0.tar.gz(r-4.6-any)
RankProd_3.38.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RankProd/json (API)
| # Install 'RankProd' in R: |
| install.packages('RankProd', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- apples.cl - Metabolomics data on spiked apples
- apples.data - Metabolomics data on spiked apples
- apples.data.vsn - Metabolomics data on spiked apples
- arab - Genomic Response to Brassinosteroid in Arabidopsis
- arab.cl - Genomic Response to Brassinosteroid in Arabidopsis
- arab.gnames - Genomic Response to Brassinosteroid in Arabidopsis
- arab.origin - Genomic Response to Brassinosteroid in Arabidopsis
- Biom - Metabolomics data on spiked apples
- golub - A subset of the Gene expression dataset from Golub et al.
- golub.cl - A subset of the Gene expression dataset from Golub et al.
- golub.gnames - A subset of the Gene expression dataset from Golub et al.
- lym.exp - Subset of the Intensity data for 8 cDNA slides with CLL and DLBL samples from the Alizadeh et al. paper in Nature 2000
- mz - Metabolomics data on spiked apples
- rt - Metabolomics data on spiked apples
On BioConductor:RankProd-3.39.0(bioc 3.24)RankProd-3.38.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
differentialexpressionstatisticalmethodsoftwareresearchfieldmetabolomicslipidomicsproteomicssystemsbiologygeneexpressionmicroarraygenesignaling
Last updated from:bf6c0b705b (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 151 | ||
| linux-devel-x86_64 | OK | 203 | ||
| source / vignettes | OK | 188 | ||
| linux-release-x86_64 | OK | 184 | ||
| macos-release-arm64 | OK | 132 | ||
| macos-oldrel-arm64 | OK | 89 | ||
| windows-devel | OK | 83 | ||
| windows-release | OK | 84 | ||
| windows-oldrel | OK | 85 | ||
| wasm-release | OK | 104 |
Exports:plotRPRankProductsRPRP.advanceRPadvanceRSadvancetopGene
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Metabolomics data on spiked apples | apples.cl apples.data apples.data.vsn Biom mz rt |
| Genomic Response to Brassinosteroid in Arabidopsis | arab arab.cl arab.gnames arab.origin |
| A subset of the Gene expression dataset from Golub et al. (1999) | golub golub.cl golub.gnames |
| Subset of the Intensity data for 8 cDNA slides with CLL and DLBL samples from the Alizadeh et al. paper in Nature 2000 | lym.exp |
| Graphical Display of the Rank Product/Sum analysis | plotRP |
| Rank Product/Rank Sum Analysis | RankProducts |
| Rank Product Analysis | RP |
| Advanced Rank Product/Rank Sum Analysis | RP.advance |
| Advanced Rank Product Analysis | RPadvance |
| Advanced Rank Sum Analysis | RSadvance |
| topGene | topGene |
