Package: Rarr 2.0.1
Hugo Gruson
Rarr: Read Zarr Files in R
The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specification in R with minimal reliance on an external tools or libraries.
Authors:
Rarr_2.0.1.tar.gz
Rarr_2.0.1.zip(r-4.7)Rarr_2.0.1.zip(r-4.6)Rarr_2.0.1.zip(r-4.5)
Rarr_2.0.1.tgz(r-4.6-x86_64)Rarr_2.0.1.tgz(r-4.6-arm64)Rarr_2.0.1.tgz(r-4.5-x86_64)Rarr_2.0.1.tgz(r-4.5-arm64)
Rarr_2.0.1.tar.gz(r-4.7-arm64)Rarr_2.0.1.tar.gz(r-4.7-x86_64)Rarr_2.0.1.tar.gz(r-4.6-arm64)Rarr_2.0.1.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rarr/json (API)
| # Install 'Rarr' in R: |
| install.packages('Rarr', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/huber-group-embl/rarr/issues
Pkgdown/docs site:https://huber-group-embl.github.io
On BioConductor:Rarr-2.1.18(bioc 3.24)Rarr-2.0.1(bioc 3.23)
dataimportbioconductorome-ngffome-zarron-diskout-of-memoryzarrc-blosclibzstd
Last updated from:4ed1f2e9ab (on RELEASE_3_23). Checks:12 WARNING, 1 ERROR, 1 FAIL. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 222 | ||
| linux-devel-arm64 | WARNING | 154 | ||
| linux-devel-x86_64 | WARNING | 176 | ||
| source / vignettes | ERROR | 204 | ||
| linux-release-arm64 | WARNING | 164 | ||
| linux-release-x86_64 | WARNING | 175 | ||
| macos-release-arm64 | WARNING | 116 | ||
| macos-release-x86_64 | WARNING | 245 | ||
| macos-oldrel-arm64 | WARNING | 121 | ||
| macos-oldrel-x86_64 | WARNING | 267 | ||
| windows-devel | WARNING | 164 | ||
| windows-release | WARNING | 162 | ||
| windows-oldrel | WARNING | 171 | ||
| wasm-release | FAIL | 184 |
Exports:create_empty_zarr_arrayread_zarr_arrayread_zarr_attributesupdate_zarr_arrayuse_bloscuse_bz2use_gzipuse_lz4use_lzmause_zlibuse_zstdwrite_zarr_arraywrite_zarr_attributeswriteZarrArrayzarr_overviewZarrArray
Dependencies:askpassbase64encclicurldigestgluehttr2jsonlitelifecyclemagrittropensslpaws.commonpaws.storageR.methodsS3R.ooR.utilsR6rappdirsRcpprlangsysvctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Define compression tool and settings | compressors use_blosc use_bz2 use_gzip use_lz4 use_lzma use_zlib use_zstd |
| Create an (empty) Zarr array | create_empty_zarr_array |
| Read a Zarr array | read_zarr_array |
| Read the attributes associated with a Zarr array or group | read_zarr_attributes |
| Update (a subset of) an existing Zarr array | update_zarr_array |
| Write an R array to Zarr | write_zarr_array |
| Read the .zattrs file associated with a Zarr array or group | write_zarr_attributes |
| Print a summary of a Zarr array | zarr_overview |
| Deprecated DelayedArray backend functions | writeZarrArray ZarrArray |
