Package: Rbec 1.20.0

Pengfan Zhang

Rbec: Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

Authors:Pengfan Zhang [aut, cre]

Rbec_1.20.0.tar.gz
Rbec_1.20.0.zip(r-4.7)Rbec_1.20.0.zip(r-4.6)Rbec_1.20.0.zip(r-4.5)
Rbec_1.20.0.tgz(r-4.6-x86_64)Rbec_1.20.0.tgz(r-4.5-x86_64)
Rbec_1.20.0.tar.gz(r-4.7-x86_64)Rbec_1.20.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
Rbec/json (API)

# Install 'Rbec' in R:

install.packages('Rbec', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:Rbec-1.21.0(bioc 3.24)Rbec-1.20.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencing microbialstrain microbiome cpp

4.00 score 1 scripts 283 downloads 2 exports 84 dependencies

Last updated from:1d7e45aaff (on RELEASE_3_23). Checks:1 NOTE, 5 FAIL, 8 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	202
linux-devel-arm64	FAIL	156
linux-devel-x86_64	OK	408
source / vignettes	OK	281
linux-release-arm64	FAIL	159
linux-release-x86_64	OK	341
macos-release-arm64	FAIL	97
macos-release-x86_64	OK	708
macos-oldrel-arm64	FAIL	132
macos-oldrel-x86_64	OK	386
windows-devel	OK	335
windows-release	OK	391
windows-oldrel	OK	309
wasm-release	FAIL	149