Package: RcwlPipelines Title: Bioinformatics pipelines based on Rcwl Version: 1.28.0 Authors@R: c(person(given = "Qiang", family = "Hu", role = c("aut", "cre"), email = "qiang.hu@roswellpark.org"), person(given = "Qian", family = "Liu", role = c("aut"), email = "qian.liu@roswellpark.org"), person(given = "Shuang", family = "Gao", role = c("aut"), email = "shuang.gao@roswellpark.org")) Description: A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language. Depends: R (>= 3.6), Rcwl, BiocFileCache Imports: rappdirs, methods, utils, git2r, httr, S4Vectors License: GPL-2 Encoding: UTF-8 Suggests: testthat, knitr, rmarkdown, BiocStyle VignetteBuilder: knitr RoxygenNote: 7.2.3 biocViews: Software, WorkflowStep, Alignment, Preprocessing, QualityControl, DNASeq, RNASeq, DataImport, ImmunoOncology SystemRequirements: nodejs Config/Bioconductor/UnsupportedPlatforms: windows Config/pak/sysreqs: cmake libglpk-dev make libgit2-dev libicu-dev libpng-dev libssh2-1-dev libuv1-dev libxml2-dev libssl-dev python3 libx11-dev zlib1g-dev Repository: Bioconductor 3.23 Date/Publication: 2026-04-28 12:49:45 UTC RemoteUrl: https://github.com/bioc/RcwlPipelines RemoteRef: RELEASE_3_23 RemoteSha: 01bab3cc8446560dca64bc08e4fc90a7af399909 NeedsCompilation: no Packaged: 2026-10-10 18:00:07 UTC; root Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut] Maintainer: Qiang Hu