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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ReactomeGSA" in publications use:'
type: software
license: MIT
title: 'ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics
  gene set analysis'
version: 1.26.0
doi: 10.1093/bioinformatics/btae338
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ReactomeGSA
abstract: The ReactomeGSA packages uses Reactome's online analysis service to perform
  a multi-omics gene set analysis. The main advantage of this package is, that the
  retrieved results can be visualized using REACTOME's powerful webapplication. Since
  Reactome's analysis service also uses R to perfrom the actual gene set analysis
  you will get similar results when using the same packages (such as limma and edgeR)
  locally. Therefore, if you only require a gene set analysis, different packages
  are more suited.
authors:
- family-names: Griss
  given-names: Johannes
  email: johannes.griss@meduniwien.ac.at
  orcid: https://orcid.org/0000-0003-2206-9511
preferred-citation:
  type: article
  title: 'ReactomeGSA: new features to simplify public data reuse'
  authors:
  - family-names: Grentner
    given-names: Alexander
  - family-names: Ragueneau
    given-names: Eliot
  - family-names: Gong
    given-names: Chuqiao
  - family-names: Prinz
    given-names: Adrian
  - family-names: Gansberger
    given-names: Sabina
  - family-names: Oyarzun
    given-names: Inigo
  - family-names: Hermjakob
    given-names: Henning
  - family-names: Griss
    given-names: Johannes
    email: johannes.griss@meduniwien.ac.at
    orcid: https://orcid.org/0000-0003-2206-9511
  journal: Bioinformatics
  year: '2024'
  doi: 10.1093/bioinformatics/btae338
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/38806182/
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/reactome/ReactomeGSA
commit: d16acc255dc2379bdfff5b8f0d61482702b1d59d
url: https://github.com/reactome/ReactomeGSA
date-released: '2026-04-28'
contact:
- family-names: Griss
  given-names: Johannes
  email: johannes.griss@meduniwien.ac.at
  orcid: https://orcid.org/0000-0003-2206-9511
references:
- type: article
  title: ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis
  authors:
  - family-names: Griss
    given-names: Johannes
  - family-names: Viteri
    given-names: Guilherme
  - family-names: Sidiropoulos
    given-names: Konstantinos
  - family-names: Nguyen
    given-names: Vy
  - family-names: Fabregat
    given-names: Antonio
  - family-names: Hermjakob
    given-names: Henning
  journal: Mol Cell Proteomics
  year: '2020'
  doi: 10.1074/mcp.TIR120.002155
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/32907876/