Package: ReactomePA 1.56.0

Guangchuang Yu

ReactomePA: Reactome Pathway Analysis

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization. This package is not affiliated with the Reactome team.

Authors:Guangchuang Yu [aut, cre], Vladislav Petyuk [ctb]

ReactomePA_1.56.0.tar.gz
ReactomePA_1.56.0.zip(r-4.7)ReactomePA_1.56.0.zip(r-4.6)ReactomePA_1.56.0.zip(r-4.5)
ReactomePA_1.56.0.tgz(r-4.6-any)ReactomePA_1.56.0.tgz(r-4.5-any)
ReactomePA_1.56.0.tar.gz(r-4.7-any)ReactomePA_1.56.0.tar.gz(r-4.6-any)
ReactomePA_1.56.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ReactomePA/json (API)
NEWS

# Install 'ReactomePA' in R:
install.packages('ReactomePA', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guangchuangyu/reactomepa/issues

On BioConductor:ReactomePA-1.57.0(bioc 3.24)ReactomePA-1.56.0(bioc 3.23)

pathwaysvisualizationannotationmultiplecomparisongenesetenrichmentreactomeenrichment-analysisreactome-pathway-analysisreactomepa

12.46 score 45 stars 9 packages 2.1k scripts 5.6k downloads 171 mentions 12 exports 123 dependencies

Last updated from:16d7fcb44c (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR260
linux-devel-x86_64OK331
source / vignettesOK326
linux-release-x86_64OK392
macos-release-arm64OK201
macos-oldrel-arm64OK217
windows-develOK278
windows-releaseOK297
windows-oldrelOK279
wasm-releaseOK234

Exports:cnetplotdotplotemapplotenrichPathwaygeneIDgeneInCategorygseaplotgsePathwaygson_ReactomeheatplotridgeplotviewPathway

Dependencies:AnnotationDbiapeaplotaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcliclustercpp11crayoncurlDBIdigestdir.expiryDOSEdplyrenrichitenrichplotevaluatefarverfastmapfilelockfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeglueGO.dbGOSemSimgraphgraphitegraphlayoutsgridExtragridGraphicsgsongtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmeopensslpatchworkpillarpkgconfigplyrpngpolyclippurrrR6rappdirsRColorBrewerRcppRcppArmadilloreactome.dbreshape2rlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfostringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotweenrutf8vctrsviridisviridisLitewithrxfunXVectoryamlyulab.utils

An R package for Reactome Pathway Analysis

Guangchuang Yu

Rendered fromReactomePA.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2025-12-07
Started: 2015-06-29