Package: ReadqPCR 1.58.0

James Perkins

ReadqPCR: Read qPCR data

The package provides functions to read raw RT-qPCR data of different platforms.

Authors:James Perkins, Matthias Kohl, Nor Izayu Abdul Rahman

ReadqPCR_1.58.0.tar.gz
ReadqPCR_1.58.0.zip(r-4.7)ReadqPCR_1.58.0.zip(r-4.6)ReadqPCR_1.58.0.zip(r-4.5)
ReadqPCR_1.58.0.tgz(r-4.6-any)ReadqPCR_1.58.0.tgz(r-4.5-any)
ReadqPCR_1.58.0.tar.gz(r-4.7-any)ReadqPCR_1.58.0.tar.gz(r-4.6-any)
ReadqPCR_1.58.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ReadqPCR/json (API)

# Install 'ReadqPCR' in R:
install.packages('ReadqPCR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ReadqPCR-1.59.0(bioc 3.24)ReadqPCR-1.58.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

dataimportmicrotitreplateassaygeneexpressionqpcr

5.36 score 2 packages 19 scripts 12 mentions 14 exports 3 dependencies

Last updated from:478bff3f95 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR136
linux-devel-x86_64OK163
source / vignettesOK162
linux-release-x86_64OK277
macos-release-arm64OK75
macos-oldrel-arm64OK88
windows-develOK87
windows-releaseOK75
windows-oldrelOK77
wasm-releaseOK97

Exports:checkValidqPCRFilenamecheckValidTaqmanFilenameseffseffs<-exprs.well.orderexprs.well.order<-mergeqpcR2CyclesSetread.LC480read.LC480SampleInforead.qPCRread.taqmanse.effsse.effs<-

Dependencies:BiobaseBiocGenericsgenerics

Functions to load RT-qPCR data into R

Rendered fromReadqPCR.Rnwusingutils::Sweaveon Jun 21 2026.

Last update: 2018-07-05
Started: 2012-09-08

Readme and manuals

Help Manual

Help pageTopics
Read qPCR dataReadqPCR-package ReadqPCR
Class CyclesSetclass:CyclesSet CyclesSet CyclesSet-class exprs,CyclesSet-method exprs<-,CyclesSet-method
Generic Function for Merging eSet and AnnotatedDataFramemerge merge,AnnotatedDataFrame,eSet-method merge,eSet,AnnotatedDataFrame-method merge-methods
Transform a dataset from qpcR Package into CyclesSetqpcR2CyclesSet
Class qPCRBatchclass:qPCRBatch effs effs,qPCRBatch-method effs<- effs<-,qPCRBatch-method exprs,qPCRBatch-method exprs.well.order exprs.well.order,qPCRBatch-method exprs.well.order<- exprs.well.order<-,qPCRBatch-method exprs<-,qPCRBatch-method qPCRBatch qPCRBatch-class qSet se.effs se.effs,qPCRBatch-method se.effs<- se.effs<-,qPCRBatch-method se.exprs,qPCRBatch-method se.exprs<-,qPCRBatch-method
Read in raw qPCR data of Light Cycler 480read.LC480
Read sample information data of a qPCR experiment from Light Cycler 480read.LC480SampleInfo
Read user formatted qPCR data and produce a qPCRBatchcheckValidqPCRFilename read.qPCR read_qPCRBatch
Read Taqman qPCR data and produce a qPCRBatchcheckValidTaqmanFilenames read.taqman read_TaqBatch