# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "RedeR" in publications use:'
type: software
license: GPL-3.0-only
title: 'RedeR: Interactive visualization and manipulation of nested networks'
version: 3.8.0
doi: 10.1186/gb-2012-13-4-r29
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RedeR
abstract: RedeR combines an R package with a stand-alone Java application for interactive
  visualization and manipulation of nested networks. Graph, node, and edge attributes
  can be configured using either graphical or command-line methods, following igraph
  syntax rules.
authors:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
  orcid: https://orcid.org/0000-0003-4942-8131
preferred-citation:
  type: article
  title: 'RedeR: R/Bioconductor package for representing modular structures, nested
    networks and multiple levels of hierarchical associations.'
  authors:
  - family-names: Castro
    given-names: Mauro AA
  - family-names: Wang
    given-names: Xin
  - family-names: Fletcher
    given-names: Michael NC
  - family-names: Meyer
    given-names: Kerstin B
  - family-names: Markowetz
    given-names: Florian
  journal: Genome Biology
  year: '2012'
  volume: '13'
  issue: '4'
  doi: 10.1186/gb-2012-13-4-r29
  start: R29
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/sysbiolab/RedeR
commit: 069eebe5468ab8afb1d8b9622be8a1d64263b586
url: https://doi.org/10.1186/gb-2012-13-4-r29
date-released: '2026-04-28'
contact:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
  orcid: https://orcid.org/0000-0003-4942-8131