Package: Rfastp 1.22.0

Wei Wang

Rfastp: An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).

Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.

Authors:Wei Wang [cre, aut], Ji-Dung Luo [ctb], Thomas Carroll [aut]

Rfastp_1.22.0.tar.gz
Rfastp_1.22.0.zip(r-4.7)Rfastp_1.22.0.zip(r-4.6)Rfastp_1.22.0.zip(r-4.5)
Rfastp_1.22.0.tgz(r-4.6-arm64)Rfastp_1.22.0.tgz(r-4.6-x86_64)Rfastp_1.22.0.tgz(r-4.5-x86_64)Rfastp_1.22.0.tgz(r-4.5-arm64)
Rfastp_1.22.0.tar.gz(r-4.7-arm64)Rfastp_1.22.0.tar.gz(r-4.7-x86_64)Rfastp_1.22.0.tar.gz(r-4.6-arm64)Rfastp_1.22.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
Rfastp/json (API)

# Install 'Rfastp' in R:
install.packages('Rfastp', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On BioConductor:Rfastp-1.23.0(bioc 3.24)Rfastp-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrolsequencingpreprocessingsoftwarezlibcpp

4.53 score 57 scripts 411 downloads 5 exports 25 dependencies

Last updated from:a859ea0e5b (on RELEASE_3_23). Checks:5 WARNING, 7 NOTE, 1 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING216
linux-devel-arm64NOTE188
linux-devel-x86_64NOTE222
source / vignettesOK294
linux-release-arm64NOTE191
linux-release-x86_64NOTE205
macos-release-arm64WARNING115
macos-release-x86_64WARNING458
macos-oldrel-arm64WARNING190
macos-oldrel-x86_64WARNING316
windows-develNOTE200
windows-releaseNOTE204
windows-oldrelNOTE186
wasm-releaseFAIL236

Exports:catfastqcurvePlotqcSummaryrfastptrimSummary

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2RhtslibrjsonrlangS7scalesstringistringrvctrsviridisLitewithr

An Ultra-Fast All-in-One FASTQ preprocessor

Wei Wang [email protected]

Rendered fromRfastp.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2020-10-01
Started: 2020-06-18