# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "RnaSeqGeneEdgeRQL" in publications use:'
type: software
license: Artistic-2.0
title: 'RnaSeqGeneEdgeRQL: Gene-level RNA-seq differential expression and pathway
  analysis using Rsubread and the edgeR quasi-likelihood pipeline'
version: 1.36.0
abstract: This workflow package provides, through its vignette, a complete case study
  analysis of an RNA-Seq experiment using the Rsubread and edgeR packages. The workflow
  starts from read alignment and continues on to data exploration, to differential
  expression and, finally, to pathway analysis. The analysis includes publication
  quality plots, GO and KEGG analyses, and the analysis of a expression signature
  as generated by a prior experiment.
authors:
- family-names: Chen
  given-names: Yunshun
  email: yuchen@wehi.edu.au
- family-names: Lun
  given-names: Aaron
- family-names: Smyth
  given-names: Gordon
preferred-citation:
  type: article
  title: 'From reads to genes to pathways: differential expression analysis of RNA-Seq
    experiments using Rsubread and the edgeR quasi-likelihood pipeline'
  authors:
  - family-names: Chen
    given-names: Yunshun
    email: yuchen@wehi.edu.au
  - family-names: Lun
    given-names: Aaron T L
  - family-names: Smyth
    given-names: Gordon K
  journal: F1000Research
  volume: '5'
  year: '2016'
  url: http://f1000research.com/articles/5-1438
  start: '1438'
repository: https://bioconductor.org/
commit: 3c2156393742e8d4ba2b7551c31b0e8274b82aeb
url: http://f1000research.com/articles/5-1438/v2
date-released: '2025-09-11'
contact:
- family-names: Chen
  given-names: Yunshun
  email: yuchen@wehi.edu.au