To cite package ‘RnaSeqGeneEdgeRQL’ in publications use:

  Chen Y, Lun ATL, and Smyth, GK (2016). From reads to genes to
  pathways: differential expression analysis of RNA-Seq experiments
  using Rsubread and the edgeR quasi-likelihood pipeline. F1000Research
  5, 1438.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline},
    author = {Yunshun Chen and Aaron T L Lun and Gordon K Smyth},
    journal = {F1000Research},
    volume = {5},
    pages = {1438},
    year = {2016},
    url = {http://f1000research.com/articles/5-1438},
  }