Package: SCArray
Type: Package
Title: Large-scale single-cell omics data manipulation with GDS files
Version: 1.20.0
Date: 2026-04-13
Depends: R (>= 3.5.0), gdsfmt (>= 1.36.0), methods, DelayedArray (>=
        0.31.5)
Imports: S4Vectors, utils, Matrix, SparseArray (>= 1.5.13),
        BiocParallel, DelayedMatrixStats, SummarizedExperiment,
        SingleCellExperiment, BiocSingular
Suggests: BiocGenerics, scater, scuttle, uwot, RUnit, knitr, markdown,
        rmarkdown, rhdf5, HDF5Array
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
        email="xiuwen.zheng@abbvie.com",
        comment=c(ORCID="0000-0002-1390-0708")))
Description: Provides large-scale single-cell omics data manipulation
        using Genomic Data Structure (GDS) files. It combines dense and
        sparse matrices stored in GDS files and the Bioconductor
        infrastructure framework (SingleCellExperiment and
        DelayedArray) to provide out-of-memory data storage and
        large-scale manipulation using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
URL: https://github.com/AbbVie-ComputationalGenomics/SCArray
biocViews: Infrastructure, DataRepresentation, DataImport, SingleCell,
        RNASeq
Config/pak/sysreqs: zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:54:44 UTC
RemoteUrl: https://github.com/bioc/SCArray
RemoteRef: RELEASE_3_23
RemoteSha: cdd2926b2fda63b732e2bce4b5a7a65de0b1105d
NeedsCompilation: yes
Packaged: 2026-11-01 17:50:45 UTC; root
Author: Xiuwen Zheng [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1390-0708>)
Maintainer: Xiuwen Zheng <xiuwen.zheng@abbvie.com>