Package 'SCLCBam'

Title: Sequence data from chromosome 4 of a small-cell lung tumor
Description: Whole-exome sequencing data from a murine small-cell lung tumor; only contains data of chromosome 4.
Authors: Thomas Kuilman
Maintainer: Oscar Krijgsman <[email protected]>
License: GPL-2
Version: 1.44.0
Built: 2026-10-10 11:07:18 UTC
Source: https://github.com/bioc/SCLCBam

Help Index

SCLCBam: Sequence data from chromosome 4 of a small-cell lung tumor

Description

Sequence reads from chromosome 4 of a whole-exome sequencing approach on a small-cell lung tumor.

Usage

getPathBamFolder()

Details

The getPathBamFolder() function returns the full path name to the folder containing the .bam file.

Value

Returns the full path name of the folder containing the .bam file.

Author(s)

Thomas Kuilman ([email protected])

References

The dataset was downloaded from the European Nucleotide Archive using the accession number PRJEB6954 using sample accession number SAMEA2697779, and reads on chromosome 4 were extracted. The full .bam file containing data for all chromosomes can be downloaded from here http://www.ebi.ac.uk/ena/data/view/SAMEA2697779

Examples

getPathBamFolder()