Package: SCnorm 1.34.0

Rhonda Bacher

SCnorm: Normalization of single cell RNA-seq data

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Authors:Rhonda Bacher

SCnorm_1.34.0.tar.gz
SCnorm_1.34.0.zip(r-4.7)SCnorm_1.34.0.zip(r-4.6)SCnorm_1.34.0.zip(r-4.5)
SCnorm_1.34.0.tgz(r-4.6-any)SCnorm_1.34.0.tgz(r-4.5-any)
SCnorm_1.34.0.tar.gz(r-4.7-any)SCnorm_1.34.0.tar.gz(r-4.6-any)
SCnorm_1.34.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SCnorm/json (API)
NEWS

# Install 'SCnorm' in R:
install.packages('SCnorm', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rhondabacher/scnorm/issues

Datasets:

On BioConductor:SCnorm-1.35.0(bioc 3.24)SCnorm-1.34.0(bioc 3.23)

normalizationrnaseqsinglecellimmunooncology

8.70 score 51 stars 81 scripts 488 downloads 15 mentions 7 exports 57 dependencies

Last updated from:b2d9fae5e3 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR199
linux-devel-x86_64NOTE355
source / vignettesOK361
linux-release-x86_64NOTE311
macos-release-arm64NOTE166
macos-oldrel-arm64NOTE169
windows-develNOTE240
windows-releaseNOTE248
windows-oldrelNOTE232
wasm-releaseOK151

Exports:getCountsgetSlopesplotCountDepthplotWithinFactorresultsscaleNormMultContSCnorm

Dependencies:abindBHBiobaseBiocGenericsBiocParallelcliclustercodetoolscpp11data.tableDelayedArrayfarverforcatsformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmomentspillarpkgconfigquantregR6RColorBrewerrlangS4ArraysS4VectorsS7scalesSeqinfoSingleCellExperimentsnowSparseArraySparseMSummarizedExperimentsurvivaltibbleutf8vctrsviridisLitewithrXVector

SCnorm Vignette

Rendered fromSCnorm.Rnwusingknitr::knitron May 30 2026.

Last update: 2025-06-11
Started: 2016-11-12