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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SEMPLR" in publications use:'
type: software
license: MIT
title: 'SEMPLR: SNP Effect Matrix Pipeline in R'
version: 1.0.1
doi: 10.32614/CRAN.package.SEMPLR
identifiers:
- type: url
  value: https://grkenney.github.io/SEMPLR
abstract: SEMPLR computes transcription factor binding affinity scores for genomic
  positions and genetic variants. Scores are computed from SNP Effect Matrices (SEMs)
  produced by SEMpl. 223 pre-computed SEMs are included with the package or custom
  sets can be provided. Enrichment can be tested among sets of genomic positions to
  determine if transcription factor binding events occur more often than expected.
  Comparing binding affinity scores between alleles can reveal differences in transcription
  factor binding with genetic variation. This package also includes several visualization
  functions to view scores both on the motif and variant/position level.
authors:
- family-names: Kenney
  given-names: Grace
  email: kenney.grace6@gmail.com
  orcid: https://orcid.org/0009-0009-6308-3150
- family-names: Phanstiel
  given-names: Douglas
repository: https://bioc-release.r-universe.dev
repository-code: https://www.github.com/grkenney/SEMPLR
commit: abd9ceda6e0974d8671c35bb25ab3087b6a78c57
url: https://github.com/grkenney/SEMPLR
date-released: '2026-05-18'
contact:
- family-names: Kenney
  given-names: Grace
  email: kenney.grace6@gmail.com
  orcid: https://orcid.org/0009-0009-6308-3150